3300011936: Human oral microbial communities from Los Angeles, CA, USA - S01-06-R

Overview

Basic Information

• IMG/M Taxon OID: 3300011936
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134610 | Ga0119780
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S01-06-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115238576
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F063777	Metagenome	129	N
F081456	Metagenome	114	N
F085821	Metagenome	111	N
F097525	Metagenome	104	N
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119780_100007	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	235138
Ga0119780_100172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44661
Ga0119780_100177	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43677
Ga0119780_100274	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	31935
Ga0119780_100907	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	13270
Ga0119780_107167	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2561

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119780_100007	Ga0119780_100007143	F051212	MKKFFFIFVLYWLHSCNGTEKIIATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLYNHLNLEK*
Ga0119780_100007	Ga0119780_100007229	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISVDKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGKEPYQLTFSLDDKTLAMIIKELGEAVASFKKK*
Ga0119780_100007	Ga0119780_10000758	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNRAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*
Ga0119780_100172	Ga0119780_10017213	F051214	MPGKIVAHDTHLRIDTEFIDLKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0119780_100172	Ga0119780_10017227	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVTFFVKLVITAIGFLLCAMTVILYTISAE*
Ga0119780_100172	Ga0119780_1001729	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKK*
Ga0119780_100177	Ga0119780_10017724	F101360	VSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPQVDGLQVGTVSVSAPQPRYQVVDENALVTWLEWNKPDAVHKVPAPWFVATAALEGFIKQTGEVPDGVEVVQGDPRISVRVSGAQEEAIRELISTGDISLIEIEGGDA*
Ga0119780_100274	Ga0119780_10027424	F054111	MNKSLESITHEEFLKLTERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTSDRDLFLNILDKEILFLI*
Ga0119780_100907	Ga0119780_10090715	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQRISFDSQSAEYSKPQLFLLYRSLRVDC*
Ga0119780_107167	Ga0119780_1071672	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*