Scaffold Ga0119780_100007

Overview

Basic Information

• Taxon OID: 3300011936
• Scaffold ID: Ga0119780_100007
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S01-06-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 235138
• Total Scaffold Genes: 243
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (10.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051212	Metagenome	144	N
F063777	Metagenome	129	N
F097525	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119780_100007143	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKIIATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLYNHLNLEK*
Ga0119780_100007229	F097525	AGGA	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISVDKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGKEPYQLTFSLDDKTLAMIIKELGEAVASFKKK*
Ga0119780_10000758	F063777	N/A	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNRAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*