Scaffold Ga0119782_100402

Overview

Basic Information

• Taxon OID: 3300011933
• Scaffold ID: Ga0119782_100402
• Source Dataset Name: Human subgingival plaque microbial communities from Los Angeles, CA, USA - S03-03-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20229
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (91.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Subgingival Plaque → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F095632	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119782_10040212	F095632	AGGA	MSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAKNFAETIDSIKTPSNN*
Ga0119782_10040234	F049707	AGGAG	VVSEYRSPHNDGHDPYILIWEYGTEVQRAEFVERWAEYEPDTGWTVWHFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKQKEN*