3300011933: Human subgingival plaque microbial communities from Los Angeles, CA, USA - S03-03-R

Overview

Basic Information

• IMG/M Taxon OID: 3300011933
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134612 | Ga0119782
• Sample Name: Human subgingival plaque microbial communities from Los Angeles, CA, USA - S03-03-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105136808
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Subgingival Plaque → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F076191	Metagenome	118	N
F095632	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119782_100028	All Organisms → cellular organisms → Bacteria	96199
Ga0119782_100402	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	20229

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119782_100028	Ga0119782_10002889	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRCTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDNYYDNPTTYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGILRDA*
Ga0119782_100402	Ga0119782_10040212	F095632	MSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAKNFAETIDSIKTPSNN*
Ga0119782_100402	Ga0119782_10040234	F049707	VVSEYRSPHNDGHDPYILIWEYGTEVQRAEFVERWAEYEPDTGWTVWHFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKQKEN*