Scaffold Ga0119789_100125

Overview

Basic Information

• Taxon OID: 3300011925
• Scaffold ID: Ga0119789_100125
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S04-07-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39295
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119789_1001253	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALAEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPKRIRK*
Ga0119789_1001254	F036281	GAG	MVSIIRVSEGPVDIYELRMKYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCNDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYFDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTLRMSDDQKSKFTRIAMTNEKGHQTYDWILENVEWAADTIRYF*
Ga0119789_1001255	F074985	AGGAGG	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTHPQESILIKNIEEYEFIQYRHQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVVVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLAQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFLDTAEKRRYYYARHTTKLRIVTNAENGRKEYLLDHIKAMHID*