3300011925: Human oral microbial communities from Los Angeles, CA, USA - S04-07-R

Overview

Basic Information

• IMG/M Taxon OID: 3300011925
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134619 | Ga0119789
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S04-07-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73565216
• Sequencing Scaffolds: 14
• Novel Protein Genes: 17
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F063777	Metagenome	129	N
F071327	Metagenome	122	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119789_100125	All Organisms → cellular organisms → Bacteria	39295
Ga0119789_100933	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	8115
Ga0119789_101545	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5456
Ga0119789_101749	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4991
Ga0119789_101760	All Organisms → Viruses → Predicted Viral	4975
Ga0119789_102297	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4069
Ga0119789_103688	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2775
Ga0119789_103862	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2680
Ga0119789_103880	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2669
Ga0119789_107185	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1611
Ga0119789_107422	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1569
Ga0119789_108127	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1445
Ga0119789_113075	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	957
Ga0119789_117005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	768

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119789_100125	Ga0119789_1001253	F027205	VASRLIVSADDILKAVKESEEFERKALAEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPKRIRK*
Ga0119789_100125	Ga0119789_1001254	F036281	MVSIIRVSEGPVDIYELRMKYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCNDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYFDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTLRMSDDQKSKFTRIAMTNEKGHQTYDWILENVEWAADTIRYF*
Ga0119789_100125	Ga0119789_1001255	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTHPQESILIKNIEEYEFIQYRHQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVVVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLAQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFLDTAEKRRYYYARHTTKLRIVTNAENGRKEYLLDHIKAMHID*
Ga0119789_100933	Ga0119789_1009334	F059076	MTHKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVGSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPNSGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE*
Ga0119789_101545	Ga0119789_1015456	F041827	MKHFLSALALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDSQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0119789_101749	Ga0119789_1017496	F042387	ETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYEYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMIYEYNK*
Ga0119789_101760	Ga0119789_1017603	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNTNGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0119789_102297	Ga0119789_1022972	F040685	MKKLLFKLFFALAFVSISLHGQEKIQQVEFSSFGGRAVYSSRYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKELKDGPSEQAADGQDKVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIIAKEFGKKSIYE*
Ga0119789_102297	Ga0119789_1022974	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGPSEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0119789_103688	Ga0119789_1036885	F097490	MFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0119789_103862	Ga0119789_1038621	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLK
Ga0119789_103880	Ga0119789_1038804	F063777	MKILNIKISALPPENNSFWMKLLLHLCVPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCTKSNEYLDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0119789_107185	Ga0119789_1071853	F043990	MIKKLGIIFTFGVIILGIVVYADHKIERSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGEKIIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNITNGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIF*
Ga0119789_107422	Ga0119789_1074221	F071327	FFYICVYNLDKMEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMLLLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG*
Ga0119789_108127	Ga0119789_1081272	F030786	MLVVMIVTSSLQLLLKNGSATKGGNAMGTKKASKISFADITDGDKAKVVAIKVKYFDDDEADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0119789_113075	Ga0119789_1130752	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFNTKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKGVYE*
Ga0119789_117005	Ga0119789_1170052	F057446	KNKFKMNSISFGKTTITSYPEYFEIVDNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESRIEKSKIKEIVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*