Scaffold Ga0119804_100034

Overview

Basic Information

• Taxon OID: 3300011914
• Scaffold ID: Ga0119804_100034
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S14-04-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88328
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (17.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080165	Metagenome	115	N
F090516	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119804_10003459	F080165	N/A	MKNKKFILGILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR*
Ga0119804_10003479	F090516	N/A	MKSNLSTELFLAFERYFIENDENVLLDKISSGFTDVVLGIEFLPQNMTEDVDRKKKLLKKYGFSSATALAEDFRERVLNFDEPIPENFEKDGVGYVYTFISGYDVFYKRMYVFGIHCFEDCFEVTYFDLDNDAGAGDYYKDHEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYKGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYSYSFWLCHLDEGADAYLFLLFPEEDMPEIMKLAKILGIPLKAYFK*