NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300011914

3300011914: Human oral microbial communities from Los Angeles, CA, USA - S14-04-R



Overview

Basic Information
IMG/M Taxon OID3300011914 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0113963 | Gp0134634 | Ga0119804
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S14-04-R
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size63367975
Sequencing Scaffolds12
Novel Protein Genes21
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F040685Metagenome161N
F042387Metagenome158N
F049707Metagenome146N
F051212Metagenome144N
F054111Metagenome140N
F057446Metagenome136N
F058221Metagenome135N
F059076Metagenome134N
F061925Metagenome131N
F061926Metagenome131N
F061927Metagenome131N
F064818Metagenome128N
F064819Metagenome128N
F071327Metagenome122N
F080165Metagenome115N
F089056Metagenome109N
F090516Metagenome108N
F097525Metagenome104N
F101359Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119804_100002All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae229166Open in IMG/M
Ga0119804_100007All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae180957Open in IMG/M
Ga0119804_100011All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae148861Open in IMG/M
Ga0119804_100016All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae132013Open in IMG/M
Ga0119804_100025All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae99046Open in IMG/M
Ga0119804_100034All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae88328Open in IMG/M
Ga0119804_100065All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae64966Open in IMG/M
Ga0119804_100116All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae49377Open in IMG/M
Ga0119804_100143All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales42995Open in IMG/M
Ga0119804_100610All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales13337Open in IMG/M
Ga0119804_100716All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae10764Open in IMG/M
Ga0119804_119022All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119804_100002Ga0119804_100002100F040685MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGRAVYSERYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0119804_100002Ga0119804_100002101F040685MKKLLFKLFFALVFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNAYGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0119804_100002Ga0119804_100002103F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKDVYLVITKDSIIYRLTEGVTDKKNIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQVIDIKYSQLDNHLNLEK*
Ga0119804_100002Ga0119804_100002115F101359MKKFLSKRSILVSALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQNFTDSYKETVK*
Ga0119804_100002Ga0119804_10000216F097525MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLSLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGKAVASFKKG*
Ga0119804_100002Ga0119804_100002166F089056MNVFCKIILPILCIISCSKRKEADNTMVLEKNNTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0119804_100002Ga0119804_100002209F059076MTNKILLLGLLLGGVSINAQVQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0119804_100002Ga0119804_10000238F061925MSWEYSINLDSEESASSVVTDLKICELFYSSTMDYIDWKNPESIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTNEEVTLEHIFRSVI*
Ga0119804_100007Ga0119804_10000783F042387MKKIILFFMAGLFLISCSRENDKMTDETLANSPKIQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQTGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEMNKNVSNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFPVLVVEFCGLDKDENTIVDYMNFRWVNHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0119804_100011Ga0119804_100011142F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKMRISMETMVSEENLDIERSDLEDLTGNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK*
Ga0119804_100016Ga0119804_10001611F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTGFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVSALLFEYAYPWRLIFG*
Ga0119804_100025Ga0119804_10002531F061926MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPFTDFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0119804_100034Ga0119804_10003459F080165MKNKKFILGILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR*
Ga0119804_100034Ga0119804_10003479F090516MKSNLSTELFLAFERYFIENDENVLLDKISSGFTDVVLGIEFLPQNMTEDVDRKKKLLKKYGFSSATALAEDFRERVLNFDEPIPENFEKDGVGYVYTFISGYDVFYKRMYVFGIHCFEDCFEVTYFDLDNDAGAGDYYKDHEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYKGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYSYSFWLCHLDEGADAYLFLLFPEEDMPEIMKLAKILGIPLKAYFK*
Ga0119804_100065Ga0119804_10006560F064818MDKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQFSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLPLNDERVQCLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK*
Ga0119804_100116Ga0119804_10011624F057446MNSISFGKTTITSYPEYFEITDNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0119804_100143Ga0119804_10014314F054111MVFKNLEKENMNKTLDNITHEVFIKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKIVKIKWDLDYGLSLETKALSTSYKDLFFNVLHKEILSL*
Ga0119804_100610Ga0119804_10061012F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSAIKGGNTMGTKKISLVDITEGDDSTEGVLKVKYFDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0119804_100716Ga0119804_10071613F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSSFAQNAYSLADKFLLPSLEVGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0119804_100716Ga0119804_1007168F061927MIMKNSIFILSAMLILGACSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0119804_119022Ga0119804_1190222F049707VVSEYRSPHNDGHDPYILIWEYGSEVQRAEFTERWADYDPETGWTRWYFHLVDGRVMTFPATEWEQRDDVNHLTTIYFVPKKEES*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.