Basic Information | |
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IMG/M Taxon OID | 3300011914 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0113963 | Gp0134634 | Ga0119804 |
Sample Name | Human oral microbial communities from Los Angeles, CA, USA - S14-04-R |
Sequencing Status | Permanent Draft |
Sequencing Center | University of California, Los Angeles |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 63367975 |
Sequencing Scaffolds | 12 |
Novel Protein Genes | 21 |
Associated Families | 20 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 9 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 2 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Oral Microbial Communities From Los Angeles, Ca, Usa |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
Location Information | ||||||||
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Location | USA: Los Angeles | |||||||
Coordinates | Lat. (o) | 34.0722 | Long. (o) | -118.4441 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F030786 | Metagenome | 184 | N |
F040685 | Metagenome | 161 | N |
F042387 | Metagenome | 158 | N |
F049707 | Metagenome | 146 | N |
F051212 | Metagenome | 144 | N |
F054111 | Metagenome | 140 | N |
F057446 | Metagenome | 136 | N |
F058221 | Metagenome | 135 | N |
F059076 | Metagenome | 134 | N |
F061925 | Metagenome | 131 | N |
F061926 | Metagenome | 131 | N |
F061927 | Metagenome | 131 | N |
F064818 | Metagenome | 128 | N |
F064819 | Metagenome | 128 | N |
F071327 | Metagenome | 122 | N |
F080165 | Metagenome | 115 | N |
F089056 | Metagenome | 109 | N |
F090516 | Metagenome | 108 | N |
F097525 | Metagenome | 104 | N |
F101359 | Metagenome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0119804_100002 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 229166 | Open in IMG/M |
Ga0119804_100007 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 180957 | Open in IMG/M |
Ga0119804_100011 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 148861 | Open in IMG/M |
Ga0119804_100016 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 132013 | Open in IMG/M |
Ga0119804_100025 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 99046 | Open in IMG/M |
Ga0119804_100034 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 88328 | Open in IMG/M |
Ga0119804_100065 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 64966 | Open in IMG/M |
Ga0119804_100116 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 49377 | Open in IMG/M |
Ga0119804_100143 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 42995 | Open in IMG/M |
Ga0119804_100610 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 13337 | Open in IMG/M |
Ga0119804_100716 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 10764 | Open in IMG/M |
Ga0119804_119022 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 571 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0119804_100002 | Ga0119804_100002100 | F040685 | MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGRAVYSERYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE* |
Ga0119804_100002 | Ga0119804_100002101 | F040685 | MKKLLFKLFFALVFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNAYGNDHDREVWYDLLQIIAKEFGKKGIYE* |
Ga0119804_100002 | Ga0119804_100002103 | F051212 | MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKDVYLVITKDSIIYRLTEGVTDKKNIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQVIDIKYSQLDNHLNLEK* |
Ga0119804_100002 | Ga0119804_100002115 | F101359 | MKKFLSKRSILVSALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQNFTDSYKETVK* |
Ga0119804_100002 | Ga0119804_10000216 | F097525 | MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLSLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGKAVASFKKG* |
Ga0119804_100002 | Ga0119804_100002166 | F089056 | MNVFCKIILPILCIISCSKRKEADNTMVLEKNNTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ* |
Ga0119804_100002 | Ga0119804_100002209 | F059076 | MTNKILLLGLLLGGVSINAQVQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE* |
Ga0119804_100002 | Ga0119804_10000238 | F061925 | MSWEYSINLDSEESASSVVTDLKICELFYSSTMDYIDWKNPESIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTNEEVTLEHIFRSVI* |
Ga0119804_100007 | Ga0119804_10000783 | F042387 | MKKIILFFMAGLFLISCSRENDKMTDETLANSPKIQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQTGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEMNKNVSNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFPVLVVEFCGLDKDENTIVDYMNFRWVNHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK* |
Ga0119804_100011 | Ga0119804_100011142 | F064819 | MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKMRISMETMVSEENLDIERSDLEDLTGNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK* |
Ga0119804_100016 | Ga0119804_10001611 | F071327 | MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTGFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVSALLFEYAYPWRLIFG* |
Ga0119804_100025 | Ga0119804_10002531 | F061926 | MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPFTDFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS* |
Ga0119804_100034 | Ga0119804_10003459 | F080165 | MKNKKFILGILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR* |
Ga0119804_100034 | Ga0119804_10003479 | F090516 | MKSNLSTELFLAFERYFIENDENVLLDKISSGFTDVVLGIEFLPQNMTEDVDRKKKLLKKYGFSSATALAEDFRERVLNFDEPIPENFEKDGVGYVYTFISGYDVFYKRMYVFGIHCFEDCFEVTYFDLDNDAGAGDYYKDHEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYKGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYSYSFWLCHLDEGADAYLFLLFPEEDMPEIMKLAKILGIPLKAYFK* |
Ga0119804_100065 | Ga0119804_10006560 | F064818 | MDKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQFSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLPLNDERVQCLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK* |
Ga0119804_100116 | Ga0119804_10011624 | F057446 | MNSISFGKTTITSYPEYFEITDNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR* |
Ga0119804_100143 | Ga0119804_10014314 | F054111 | MVFKNLEKENMNKTLDNITHEVFIKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKIVKIKWDLDYGLSLETKALSTSYKDLFFNVLHKEILSL* |
Ga0119804_100610 | Ga0119804_10061012 | F030786 | MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSAIKGGNTMGTKKISLVDITEGDDSTEGVLKVKYFDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC* |
Ga0119804_100716 | Ga0119804_10071613 | F058221 | MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSSFAQNAYSLADKFLLPSLEVGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI* |
Ga0119804_100716 | Ga0119804_1007168 | F061927 | MIMKNSIFILSAMLILGACSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE* |
Ga0119804_119022 | Ga0119804_1190222 | F049707 | VVSEYRSPHNDGHDPYILIWEYGSEVQRAEFTERWADYDPETGWTRWYFHLVDGRVMTFPATEWEQRDDVNHLTTIYFVPKKEES* |
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