3300011914: Human oral microbial communities from Los Angeles, CA, USA - S14-04-R

Overview

Basic Information

• IMG/M Taxon OID: 3300011914
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134634 | Ga0119804
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S14-04-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63367975
• Sequencing Scaffolds: 12
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F080165	Metagenome	115	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119804_100002	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	229166
Ga0119804_100007	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	180957
Ga0119804_100011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	148861
Ga0119804_100016	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	132013
Ga0119804_100025	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	99046
Ga0119804_100034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	88328
Ga0119804_100065	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	64966
Ga0119804_100116	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	49377
Ga0119804_100143	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	42995
Ga0119804_100610	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	13337
Ga0119804_100716	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10764
Ga0119804_119022	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119804_100002	Ga0119804_100002100	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGRAVYSERYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0119804_100002	Ga0119804_100002101	F040685	MKKLLFKLFFALVFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNAYGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0119804_100002	Ga0119804_100002103	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKDVYLVITKDSIIYRLTEGVTDKKNIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQVIDIKYSQLDNHLNLEK*
Ga0119804_100002	Ga0119804_100002115	F101359	MKKFLSKRSILVSALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQNFTDSYKETVK*
Ga0119804_100002	Ga0119804_10000216	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLSLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGKAVASFKKG*
Ga0119804_100002	Ga0119804_100002166	F089056	MNVFCKIILPILCIISCSKRKEADNTMVLEKNNTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0119804_100002	Ga0119804_100002209	F059076	MTNKILLLGLLLGGVSINAQVQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0119804_100002	Ga0119804_10000238	F061925	MSWEYSINLDSEESASSVVTDLKICELFYSSTMDYIDWKNPESIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTNEEVTLEHIFRSVI*
Ga0119804_100007	Ga0119804_10000783	F042387	MKKIILFFMAGLFLISCSRENDKMTDETLANSPKIQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQTGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEMNKNVSNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFPVLVVEFCGLDKDENTIVDYMNFRWVNHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0119804_100011	Ga0119804_100011142	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKMRISMETMVSEENLDIERSDLEDLTGNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK*
Ga0119804_100016	Ga0119804_10001611	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTGFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVSALLFEYAYPWRLIFG*
Ga0119804_100025	Ga0119804_10002531	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPFTDFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0119804_100034	Ga0119804_10003459	F080165	MKNKKFILGILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR*
Ga0119804_100034	Ga0119804_10003479	F090516	MKSNLSTELFLAFERYFIENDENVLLDKISSGFTDVVLGIEFLPQNMTEDVDRKKKLLKKYGFSSATALAEDFRERVLNFDEPIPENFEKDGVGYVYTFISGYDVFYKRMYVFGIHCFEDCFEVTYFDLDNDAGAGDYYKDHEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYKGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYSYSFWLCHLDEGADAYLFLLFPEEDMPEIMKLAKILGIPLKAYFK*
Ga0119804_100065	Ga0119804_10006560	F064818	MDKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQFSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLPLNDERVQCLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK*
Ga0119804_100116	Ga0119804_10011624	F057446	MNSISFGKTTITSYPEYFEITDNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0119804_100143	Ga0119804_10014314	F054111	MVFKNLEKENMNKTLDNITHEVFIKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKIVKIKWDLDYGLSLETKALSTSYKDLFFNVLHKEILSL*
Ga0119804_100610	Ga0119804_10061012	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSAIKGGNTMGTKKISLVDITEGDDSTEGVLKVKYFDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0119804_100716	Ga0119804_10071613	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSSFAQNAYSLADKFLLPSLEVGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0119804_100716	Ga0119804_1007168	F061927	MIMKNSIFILSAMLILGACSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0119804_119022	Ga0119804_1190222	F049707	VVSEYRSPHNDGHDPYILIWEYGSEVQRAEFTERWADYDPETGWTRWYFHLVDGRVMTFPATEWEQRDDVNHLTTIYFVPKKEES*