Scaffold Ga0119804_100002

Overview

Basic Information

• Taxon OID: 3300011914
• Scaffold ID: Ga0119804_100002
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S14-04-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 229166
• Total Scaffold Genes: 239
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (12.13%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051212	Metagenome	144	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F089056	Metagenome	109	N
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119804_100002100	F040685	AGGA	MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGRAVYSERYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0119804_100002101	F040685	N/A	MKKLLFKLFFALVFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNAYGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0119804_100002103	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKDVYLVITKDSIIYRLTEGVTDKKNIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQVIDIKYSQLDNHLNLEK*
Ga0119804_100002115	F101359	N/A	MKKFLSKRSILVSALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQNFTDSYKETVK*
Ga0119804_10000216	F097525	AGGA	MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLSLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGKAVASFKKG*
Ga0119804_100002166	F089056	N/A	MNVFCKIILPILCIISCSKRKEADNTMVLEKNNTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0119804_100002209	F059076	N/A	MTNKILLLGLLLGGVSINAQVQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0119804_10000238	F061925	AGGA	MSWEYSINLDSEESASSVVTDLKICELFYSSTMDYIDWKNPESIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTNEEVTLEHIFRSVI*