Scaffold Ga0120086_100466

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120086_100466

Scaffold Ga0120086_100466

Overview

Basic Information
Taxon OID	3300011738 Open in IMG/M
Scaffold ID	Ga0120086_100466 Open in IMG/M
Source Dataset Name	Mine pit pond microbial communities from Vermont, USA - 1M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Vermont
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4099
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location Name	USA: Vermont
Coordinates	Lat. (^o)	43.727094	Long. (^o)	-72.425964	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000346	Metagenome / Metatranscriptome	1253	Y
F009260	Metagenome / Metatranscriptome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120086_1004668	F000346	AGGAG	MDKMDLMQDKKTAAKAVHKHEKALHPGKPLTKMKAGGKTNSDMLKMGRNLAKVANQKSPGRKGA*
Ga0120086_1004669	F009260	AGGAG	MATYKQPTKVASVVVGEEPAKTTMRKANVAVANTRSQDYPPMKTSGIKIRGTGCATKGVMARGPMA*

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