Scaffold Ga0120086_100036

Overview

Basic Information

• Taxon OID: 3300011738
• Scaffold ID: Ga0120086_100036
• Source Dataset Name: Mine pit pond microbial communities from Vermont, USA - 1M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Vermont
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28561
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (74.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location

• Location Name: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F006653	Metagenome / Metatranscriptome	367	Y
F007691	Metagenome / Metatranscriptome	346	Y
F027417	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120086_10003636	F006653	AGGAGG	MSEQLSNKYRDNLRIDAVRDATNGLRAELDALKVDVTNFVGALLQSGVVELVKDEEGNIVYKINKVVLVDESVQQD*
Ga0120086_10003646	F003863	GGAGG	MESRQVSGRQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPPFGDPADAGEDEGYDGGEA*
Ga0120086_10003647	F001477	AGGAGG	MSNIYTIHPPKSDLILFYEVVTPEGENEWGGASAQQAIQWLSLAPKGARVLVSAWDSDEEDAHLVGQTIDITEIIQQARQVGR*
Ga0120086_10003650	F027417	GAG	MSYDYRVTFVTDYLTITTNVCLELDDTIGNLSDEAYEQATINGMNNIEDELGKIDETIINDITVTLLLDEEEIELGSFGEFPPVHVEVSNG*
Ga0120086_10003651	F007691	GAGG	METINQLVNEIYEDNYSHLEFDDNMGGDCDCHIHTTLKTIVKYWHEEESK*