Scaffold Ga0137438_1051458

Overview

Basic Information

• Taxon OID: 3300011431
• Scaffold ID: Ga0137438_1051458
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1223
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9775
  • Long. (^o): -107.0028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086047	Metagenome / Metatranscriptome	111	Y
F089338	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137438_10514582	F089338	GGAG	MTFMMIEDALSDEELALPDSGSVKCSWCGEMILPAGKELTLAMCQACYERMLAEFLRGQQMKEADSHASDR*
Ga0137438_10514583	F086047	AGGAGG	MHAEQIAFPFRARPSQRHSYSSADLIGRSYVDGHATVTVVSVCLDDDKRVMVERDLDGRAWSMPAWLMHLIFVETVGKRAA*