NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137446_1181722

Scaffold Ga0137446_1181722


Overview

Basic Information
Taxon OID3300011419 Open in IMG/M
Scaffold IDGa0137446_1181722 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9776Long. (o)-107.0023Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013841Metagenome268Y
F046265Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0137446_11817222F046265AGGAGMNFAIIPWQVFLDALQKQQPNALEAWLRRWLFTNEGVLLAHQQIGTN*
Ga0137446_11817223F013841N/AHPMKILLATMFKKVPVRKTKQRATICKRCGTRIYSMSYLKVHLESHERNTH*

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