Scaffold Ga0137442_1000001

Overview

Basic Information

• Taxon OID: 3300011414
• Scaffold ID: Ga0137442_1000001
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 264199
• Total Scaffold Genes: 246
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (58.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9776
  • Long. (^o): -107.0026
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068077	Metagenome / Metatranscriptome	125	Y
F089338	Metagenome / Metatranscriptome	109	Y
F093614	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137442_1000001171	F089338	AGGA	MTLLQIEDALSDEEELAQRNGLTVKCSWCGEIIQLDGKELALAMCQACYERMLAEFLRAQQMNQPDSHASDR*
Ga0137442_10000012	F068077	N/A	MDRSQRTVDSLRLLSDWSKWLISLETIVCVSLWPKLTGKPSPSRLMYTGWMMFWASIIVAAILLLCISFFVRRVDDSADRDMKKVWVLVGLQYACFLAGLFCFALNVILLWPGLSD*
Ga0137442_100000162	F093614	AGGA	MIKQEPDAKELAFLEELEKHVNKWVAIVGYGSDEESIVAAGDSISEARQNAESLGFKDTTFFKVPPTDRLFVPLAPL*