Scaffold Ga0137333_1043085

Overview

Basic Information

• Taxon OID: 3300011413
• Scaffold ID: Ga0137333_1043085
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9515
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005073	Metagenome / Metatranscriptome	413	Y
F028452	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137333_10430852	F028452	N/A	MEKIEVAKDECPVAPPPRVTVYTRVLHRACQILGGADQLARHLRVSVVLLHRWLEGDDVPPSNIFLNAVDLVLPTWGPQDDALARAISASKPKKN*
Ga0137333_10430854	F005073	N/A	LFIIFIGSDVAGLIGLFLYGWMRRKEKPPPGVKPLKDEDDDWGR*