NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_11054

Scaffold Ga0153700_11054


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_11054 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12604
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F063704Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0153700_110545F028175N/AMAITIDDQPYEYTPIGQRLIIVASSDNVSNAGFRFVFDFGSFQVNVQPNASDKGILDLAPIFREQLQHDAGAINEGINVEYTSVANISCTIKEGWLVDGVFTVSGSGMADIDDVFAFLAEYQVSDGYKPNPNTRYATNGTNKYLLSERTTDTHKWIEAPARGLSNDWVYIPTRLADFGQLYSISNNGLLVDNDATDLFVSTYDNSDTLIEATNYTLFTDDNSVSRLGAYPQNLIIDGADFTNVKYYTIQAGASIAPPVYTPASRVYCFYIVPDDCRFDNVRLGWSNTCGGVDYFNFSKKSELSYNYDRKQYQKVVGTYNASTFGFNTWDRGTTDRYVNTTKGLQINSDWISVGEFNLLQTLCRSNDVFIINDDTTLTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0153700_110546F036240N/AMANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNFTNAVASGTLEKSLRYRLKIKGKEVNVSIYAKGKASQYFLARENGRRPGATPPPVSAILEWMRIKPIKLRDKESGKFQKPTEALKKQVAFLIARKIGRDGIKGWKAFDYAYENIWDEYEAKIFEAFGKDFGANLDNELNDI*
Ga0153700_110547F063704N/AMIITKYRMITDSGYIETLNEAEAIEWGNYTTVTEEVPDEATNG*
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