Scaffold Ga0153700_10806

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10806
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15020
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F021065	Metagenome / Metatranscriptome	220	Y
F047671	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1080610	F003134	N/A	MTQWSPIWKVEIDGVEYTDAVLANLTIRSGRTNIYEQAQAGYVNLQLLDVNQSAIPVAINSTIGVSVKDTSGTFVAIFGGNVVDIGLEVRDVGSVMFTQTYSITALGALARLPKALTQGVLSKKFDGDQIYDILKNVLFQSWAEVPGALTWATYDPTTTWANAQNTGLGEIDRPGNYELAARSSSTTDVYSLVSKLATSGLGYIYESATGQIGYADSTHRTTYLATNGYVDLDANQARAAGLRIETRAGDVRNYLTIKYDATSSSEKTAFDNTSIGQYGTLAQIIETTLHNAADAESQAAFYLSLRKQPQPIFSEITFDLTNPELDNSDRDNLIGVFMGEAISLANLPLNMSSGTFQGFVEGWSFQAAYNRLSVTLLLSPLAYSLQAMQWNDVPITEKWNSVSPTLDWENATIVA*
Ga0153700_1080614	F047671	N/A	LAGVTDPKTLAMGGVAAIAPVILRWLNPNDKSFGVIGE*
Ga0153700_1080617	F005697	AGGTGG	MGFLDNYEASRERLERWNRTYPTGRIETRIVEFSAEKGYVLVEAKAYRNDTDLQPAGIDYAYGYQGAYQQNMKRWFCEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTSAKVANADKQYDYWTNKFGDVPSYKTEEEVAAAGVPTLASGIAEISKQLGGELVEEAPTCMHGHRVFKTGESAKTGKAWGGYFCVERAKKDQCDPVWYQLGATGKWVVRLS*
Ga0153700_1080618	F000403	GGTGG	MSEYMEIINPKTMVGKLMRDGVIVEEYKVEQCDKCSILIRFDPFGFQKGYGNENVIWFCKGCR*
Ga0153700_1080619	F021065	AGG	MKMTLTREEEFTCHDAALALARKNADYWQTRPGGYSMEKSFHELIAQDAQSIGSEWVVAKYLGYGFDPFEQKGKRKADVGSHFEVRWTKYLAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHSKQPNWWVTQINLQPIENLRKSNYGNNPV*