Scaffold Ga0153700_10595

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10595
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17616
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F035280	Metagenome	172	Y
F036551	Metagenome	169	Y
F066434	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1059510	F001515	AGG	VATKSSFDLDFGFGRKGEQLVDELLTGGRTVEVKRDRKWFKTNNLYIETECYFQKINDWGASGLGVTEAAYWAFVLQESTLIVPTDVLRYAVKEFGREISCFIPPNQSKGFLITVDDLMTATRKYKDDDRVE*
Ga0153700_1059511	F008237	AGGA	MTIEWSRIERWQYIVDAVASDYHRKFSPIEYDDIRQSLYQWFVEHPNKLDTWEAIGEKDAKNLLYRSLRNQALDYCQHWKAKSGGYEASDLFFYEADMVEAILPAVLRGEFGLGAKVDLGRPGRPSAPNEGGNMMAMMIEVDYGFWKLPKDDRKVLFLRHAESMDFGAIAGELGLGSEDAARMRHKRAIRKLINRIGGFRPFRDDDDKPAQEEEGK*
Ga0153700_1059514	F035280	GGAG	MEKKIGRYWFCYGRKSGFGIGLNISKYSIDLDLGVWYLAVEL*
Ga0153700_1059515	F003658	AGG	MFDLQGEPTFACICGCLMFEVTVMWDMEDRTIGWYDLKQKCKECGSVSTAPTPIDGEM*
Ga0153700_1059527	F036551	AGGGGG	MLEQLNAILTDEVRRCELCGSDSWRVLHEGDESNCECEGECLRVCDNPDFSDEGCDGVAILVTEKVGK*
Ga0153700_1059537	F066434	AGGAG	MAENRGGFRPTAPQNNPANVSGTGGAGQAGTQPARYISGMAYGEGQATMAQQTAAPMAGSPATPMMPSVTPLTAPTERPDEPLTAGMDFGAGPGSEALNLPRERSLSEVLASMIDVDPTGEVQELYNFVASRGL*
Ga0153700_105958	F012770	AGG	VDFNIGDEDTPNFCHECKQQFDNSFDLIDHAMEDDEDFDPYYILPNGFKLLLGSLLRFMFHNAEEPDKIRLISQSTYVTLFAGEMGYDLIDELVEDMVVRSALQDFDKSLEELLSEETDEEGGA*