Scaffold Ga0153700_10302

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10302
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26549
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (82.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014495	Metagenome / Metatranscriptome	262	Y
F036204	Metagenome / Metatranscriptome	170	N
F059901	Metagenome	133	N
F079963	Metagenome	115	Y
F097195	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1030213	F059901	AGGA	MAGHIKRRTIASNLDKVGETVLLEKIASGLTMAGLARELNISNLSLYHWIRKDPNREERFKQARSIAAEQWADECLDIADASDNNSANADRLKIETRKWMAGVTNPDRFQAKPATAIQVNVNQLHLDALKQLNLASSNPHEAHDIIEDATIIDITPPKQVGSHNLDADDLPGVFDDD*
Ga0153700_1030216	F014495	GGA	MIKIPAQAAPLKRGHRVSSDSAWPLRGLDGKTFAERRKEQEQRK*
Ga0153700_1030239	F036204	N/A	MDMSFGFDTLITLIGGVFAIIGVWTQLSNRLAILETKLEYGDEKFNAIDKKFDEVMMHLRRIEDKLDNKADR*
Ga0153700_103027	F079963	AGGA	MARPTKTTEEPTPVVNEKEAIIAWLRSGKMNMFERSTRWLADRIEAGEHLK*
Ga0153700_103028	F097195	AGCAGG	MKQILAAQLAEWLDNNTHGYVKREGNIINIEGSIDAYELALYVQSLGAGKSTEQILNDNRTSYTGRSFARGV*