Scaffold Ga0153700_10201

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10201
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31509
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F014605	Metagenome / Metatranscriptome	261	N
F057211	Metagenome / Metatranscriptome	136	Y
F084121	Metagenome / Metatranscriptome	112	N
F085401	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1020119	F057211	N/A	MLKDHYYCLDQSGLTLELESFENQGIALELYFGGGKSLTLDIYDDLTEKFSEHYRTICSVLDPFIVEQLEEEVKKCFAK*
Ga0153700_1020120	F085401	N/A	MMSAQEYGVLKGYSEKSTRVHQIIRSGKYPEEWVQAPRKIGNQWIVFVDANWVKNVSR*
Ga0153700_1020132	F084121	N/A	MPKRKVASRSDYTLKRRFINKFNEYTPWQDIGHGEWLSLEDVQDKIKLLVQNYRTKHVEVWFEKDGKLLDYNGNVTNEPIKFIPK*
Ga0153700_1020138	F001775	N/A	MEDKERIKIATLSFMIGVVLAFVVFPRPEMQEVYRFTTRVKTDTIYSRSVDTVYVPKTKIKTQVLRDTVLIDFKPKISLFESTFPFEHGSTKVSGEVLGEVLKMTATSDYNIPVVTNTITNTETKTIVQKPKGFYLGGVVSSKMELATKVAYLDNKYLFEYQYQPMQKVHQIGVSKKLF*
Ga0153700_1020145	F014605	N/A	MKVNLAVAVTDIEGNEIPNERGEQMLLSKLVGNALFTAEDKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKDKVKAKGFTVLILAPLYEALTEK*