Scaffold Ga0153699_1219

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1219
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24415
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (73.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F011067	Metagenome / Metatranscriptome	295	Y
F030083	Metagenome	186	N
F046900	Metagenome / Metatranscriptome	150	N
F069840	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_121914	F069840	N/A	MTLTPTQRVAALRQRRKDAGLVRVEYYLTKPQAEKVKALISKLTKEQHAAH*
Ga0153699_121921	F046900	N/A	MSEPVLEPALEAAIELMDDLLSPEVYGHAIPKDAHTRAFVVRAMLRREDTRRMQDARIKAGL*
Ga0153699_12193	F011067	GAGG	MIRMCDTGYRECPRQPTCGMDCHFTTAELETRKVKPYPAVPDDIEPVPETWQVIGSVMVGAVLVVLAVICLGLFFTGLWVWSLLI*
Ga0153699_12195	F001688	GAG	MLKTVTPAQAVAHELLHAEHELLQAESGVEYATALVTYNKNRVKRLKAYLGKTEEAAT*
Ga0153699_12197	F030083	AGGAG	MKLMHEHVTGLCRQPLECWYEWEPAEPEVKEAGIVIEPAIPEQVILVEVWVNGADIFELISDDMKEVIEIAIKEDRYK*