Scaffold Ga0153702_1752

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1752
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10262
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006986	Metagenome	360	Y
F019319	Metagenome	230	N
F019644	Metagenome	228	N
F041770	Metagenome	159	N
F078386	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_175212	F019319	GGAGG	MTKRDIEDAIAFLEKIFVGPGSQDRLFEVIKSLRDELTRRNKR*
Ga0153702_175218	F078386	N/A	MATLASLTYSLGIAQAVSAPAPDHRAMANIHLASADRLDPIPADTSIVFRHGDVSWLPALAIEAGWKPNQLDKLGQVILRESGACPNRRGGDIVDKNCNITGVSEWNHRSDTSLLQINGVNYDPTRNKFAPICLQMGICTQEPLLDPLTNLQAGKLLFDYWQKAAGDGWIPWDPCNRTRTCKASTKSLP*
Ga0153702_175219	F006986	N/A	VSVVLVTWHDAHSGAESWINIKELDSDPAVVESVGFLLNEDNGGKPNHITLFQSRIGDSIDHVLHIPSGMVQKIKVLMELEIITENR*
Ga0153702_17528	F019644	GGAG	MTMSDDSPFDDRVKYLIESQCDVDNVCTAYVLIATIQNFVTTEQKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLLEDD*
Ga0153702_17529	F041770	GGA	MTEPNIGIGADILIEAHQLVTGPRNDTYGDVVDDYTKVIAIFEGLTGIRLSLADALLFMVSVKLARLRTNLERNRLHHDSLLDTLGYLGLLNQAYQDLPFPRTVAEK*