Scaffold Ga0153702_1396

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1396
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15069
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (32.26%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F028738	Metagenome / Metatranscriptome	190	N
F036603	Metagenome	169	N
F042894	Metagenome	157	N
F043355	Metagenome / Metatranscriptome	156	N
F053132	Metagenome / Metatranscriptome	141	N
F068577	Metagenome / Metatranscriptome	124	N
F093501	Metagenome / Metatranscriptome	106	N
F097320	Metagenome	104	N
F105180	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_139611	F097320	N/A	MTNTDRLAATLRRLSTEARSLSSYQTAFVTQHDINRVSIDTDRLLSVLSITDASRLDDPNDLLELRERLNIVRADLASLLVSIQNLHEKAEEMNGTLSDAETILDNADEVL*
Ga0153702_139613	F028738	GGAGG	VSTSTRHDPRTPCNVILADQTIVLMWIVKAETIRQYSVGDMKQAEVELADFEAVILDKQTKYLKHIAFATFELNGNHYVIDSGSLGVGHKINRKSVHLRQIWLSARSFFPQ*
Ga0153702_139619	F042894	N/A	MPDPLAHSAEMLASPAHIIRGLSYQIAYARDRVLQGDWTEKFARDRIILCGAIAEDNLRTMHGCKLVSIYANLTTGCRALLTWSFVDRNGEKDAGSVHPTMDGK*
Ga0153702_139622	F036603	AGGA	MYATVALLLCSAVGAVSVAFITDHILSSFQDSNTMALLITDAGTKSDDANLERQLTTATLGLKACRDLGWALAVGCVGVGVAVFLRFRRQNAS*
Ga0153702_139623	F001923	N/A	MSPPPAPVDSEATQSLVKDGLVASILGGLAMTARLLLSPEPVSPGWVLRRITAAAITASLVGYGIQDHIASPGLRMAAVGAAGYAAPEVMDYVLKYIKARGEAEVAKVVKKPNGKKKPAKRGK*
Ga0153702_139626	F105180	N/A	MLHIILFVTGLLIGLVAGLLIYRKHLDKLKATEAKAKSIVDALKGR*
Ga0153702_13963	F068577	N/A	MSHRKPDPLLLRVMQAIHQTAEKPADGFRTIDEWAVVWRCKRNAAREYVIKGMKLGIIEKRIYRRIIRKDAKPYPTAHYGEKTRQRTR*
Ga0153702_13965	F053132	GGA	MTAPTDDELAEMSKAWGVSVDRLRFLATCPHYDSKPHIRVDDYKDPAERNIAKAIREAIRGSWLPADAAKIGKVTLKEIEAFVCRHGIIWPPNCRPRLGLHGRNRSNLLANGRLTMAQAAAKGIAEGLTATETALKYNMSAPGMYNAAHRQGLTFISHLEKYGARRGGPTNLKAKPVQSEDPLVAEARASVELSLRNRPKA*
Ga0153702_13967	F093501	GGA	MRRVLKAPQTIVLLSGYARSGKDTFAEGMTRYSVDVTRIAFADALKDAANNYACQLGLSGVNFHEEGFKSAHRDTLVAMGRFARSMHKDVFIFNLTETANRQRGHVVVPDTRYINEVMVTKQIMGEVRNWRVVHLHIETEGVGPANEEEAASIREMLEGTIPDQTYVFKPNSAVTIREVAGSVAKHLQL*
Ga0153702_13968	F043355	N/A	MEPTNDRPPLTTIDKSGTYVLKMSLPKEDKVKVYDDGVSARLFFKTAEGLCFSKSYGTKYGKSLAMLVGKISGKYVSEPKADLSVPDFLDYLRPATAVYFQAEVEVTPDGEWQGRPQFKYKLNFPKGKGVAASTIPTPTDW*