Scaffold Ga0153702_1119

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1119
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30031
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (44.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F038227	Metagenome / Metatranscriptome	166	N
F074803	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_111929	F010611	GAGG	MTQKEYGDRIGISQPRVAQLIAQGMPMTSPEAADIWRSQNIRSKRKPDSPKPPTPEHTAIEQEGPYRPAEASNPIDTATAAIDSPQGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAASAKNLTSARDEVIAQAEKERRLVSGDWVRRVMQEHDGAVASLLKAMPKQLSGRISPHDPEHCEKELDRWVQEVALKTLHQTDPWK*
Ga0153702_111935	F005633	N/A	MRIATTISVDKNGKTKLVSGPEVDATLQRDGFNTATIPEGGKLILWIQGALAPKVRKG*
Ga0153702_111936	F009147	N/A	MAFQADISTEYSMGREGFELFTTTAAQTGAWSGLIPTEPTVFTSITGNRIAGTWTSKTIPAGFPLVGNITGFQISSGSVVAFNARA*
Ga0153702_111937	F038227	GAG	MISLGIALNRLVAGQAGGTDAPVLRRDVLQEDDFFVLQEDGSGKLVITFGTFDSLLREDAGFLQQEDAFKLQIQSN*
Ga0153702_111940	F074803	N/A	MIKIEFTPQQFNQLYELLVIGMKAGNVTNMKVGIPLVDLLEAAAAQHKPE*
Ga0153702_111945	F009398	N/A	VTIIGSSLQQGMTVLQQMLGAPMFIWEGRSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVSMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR*
Ga0153702_111946	F005024	GAGG	MTVDSSRFDAAMKQYLTQTSRDLHKAVNSRFFYLMVRLFVLVPPKSPGQERRRISDYLGTPLGNINRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKIIRIYNKGFTQFQSPKWKPLSKPAGYKAPKKTNAALVSLANQYGLPEENVAVHKGTKARGIQATPGFNPTASVVMTAGVADNQYNRVAMIYNQAMQKAMDDELAELTNHMTEAMLANGKVLEDNGIEIK*
Ga0153702_111947	F006107	GGA	MNAVALRAELAVADYLASADWSASGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRTDLTCELEIAIELQLSADDTDEADVLTTVQVLDNRILPLFDESGASVLDAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATI*