Scaffold Ga0153703_1454

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1454
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14060
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F019137	Metagenome / Metatranscriptome	231	Y
F063695	Metagenome	129	N
F067734	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_145415	F000763	AGGCGG	MKNMKNPVVLAGGAFLAAWASSNFDLDYRAVLWAVLSGVFGYATPKK*
Ga0153703_145419	F063695	GGAG	MKITANDFDLLTDTAMGWKGNDWESQADRFTKSVSFDWVAVYWFDSITNMILARTFLEQNGHDYQESYDENMESFVLLTNYDSYNMAVTA*
Ga0153703_145420	F067734	GGCGG	MSNTDKLLIIAIIGMLIGFILVLLDVQRVAYQKGLREGWHRGRSTSRQEFWEE*
Ga0153703_14548	F019137	AGG	MAKLKITRTDGSTLEGEITPAVEYSFELHHKVGFHKAFREREEQSMVFWLAWEVTRRSGETVKPFGIEFIETLKAVEVLDSDPLA*