Basic Information | |
---|---|
Taxon OID | 3300011336 Open in IMG/M |
Scaffold ID | Ga0153703_1411 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 14788 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (88.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002386 | Metagenome / Metatranscriptome | 565 | Y |
F005738 | Metagenome / Metatranscriptome | 391 | Y |
F010315 | Metagenome | 305 | Y |
F058938 | Metagenome | 134 | Y |
F099169 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0153703_141116 | F002386 | GGAG | MRFAFIPKGQYKIGQIIQVQGRDMRVESYTHTGRNLIACTLDGAPKFERIACICTDSPSIIGEAA* |
Ga0153703_141119 | F010315 | AGGAG | MTDLFQNFQGADLERLADCLVAIRKAGLTTSKHTMAGLNDSSGNVWVWDEDWAGCVACSIGFDVFWVYNCPECGEEHEFENYLELEEYQSQYSGQCTSCAEVTA* |
Ga0153703_141122 | F058938 | AGG | MTDPKHYDKTTVTFHRGNAFTPEGIDAAPFATFTMNDLVDRDLIDAICDLVREHTNKAHADFCNIKLSTEDWDC* |
Ga0153703_141124 | F099169 | GGAGG | MTHPTIAEALAPFRPLTYAEHYYVDLGYQHELGKANEHEYKRAMAEGAEARRLLNRGALEAMTRSY* |
Ga0153703_14113 | F005738 | N/A | MSFGVALRNSVAIGLAGIATLFSGTRDSGSSVGNLLTESGDNLVQEDGGQILLE* |
⦗Top⦘ |