Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1405 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1405 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14955
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14955

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F021065	Metagenome / Metatranscriptome	220	Y
F025683	Metagenome / Metatranscriptome	200	Y
F033645	Metagenome / Metatranscriptome	177	Y
F047671	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_140511	F003134	N/A	VPIFGGNVVDIGLSVRDVGSTMFTQTYSITALGALARLPKALTNGVLPKEFDGDQIYDILSAVLFNTWAQVAGSVTWGNYTPAGTTWATAENNGLGEIDRPGNYELAARSSERIDVYSLVSALATSGLGYLYEDAQGRIGYADSTHRTNYLAANGYVDLDANQARAAGLQIQTRVGDVRNSLTIKYGATSSSEQSASDAASIAQFGTLAQIITTTLHNSADATAQANFYLSLRAQPQPIFSEISFDLTNPEIDNADRDNLINVFMGEAIALTNLPLNMASGTFQGFVEGWSFKAGYNRLSVTLLLSPLAYSLQAMRWNDVPITERWNSVSGTLDWENATIVA*
Ga0153703_140515	F047671	N/A	MAAALALYMAGVTDPKTLAMGGVAAVAPVILRWLNPNDKAFGSTGK*
Ga0153703_140517	F025683	GGAG	MVLDLLDPATLGRLVGIVCLMILAAAAGYAKGFKEGKREGMARRKAMIRHMANKAVK*
Ga0153703_140518	F033645	AGGCGG	MAGFLDNYEDVATRIKRFWETHPSGRIENHIIEFNAEKGFILVQTQIFKEYEDEKPSAIDYAFGNVATYNVQMKKFFCEDTVTSSIGRAIGLLLGTDKRPTRQDMEKVETISATVAKSTADDYDPWAIKHGDVPSYKTAAEAEQSGIPSFGSSMDEIAKQLGGEIVEEAPKCQHGHRIWKTGKKKNGDDWAGYFCVERDRAAQCQTQWYVFGSNGKWRAQ*
Ga0153703_140519	F000403	GGA	MSDYSEIIYPQSMTAKLLLNGEVVDEYKIEQCDKCSMLTRLDPFGYQKQFGGEKVIWFCKGCR*
Ga0153703_140520	F021065	AGG	MKMALTREEEFICHEASIALAKQNKDYHEWKEGSYTAEKSFHDQIAQDAHAIGAEWVVAKYLGFEFRPFEDKGKRKADVGSHFEVRWTKYVAGQLIIHEYDRTDDVAILVTGESPHFFIAGWIPIAMAKKPRYRHSKQPNWWVTQINLQPIENLRRSNYGQNQI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1405

Overview

Ecosystem & Geography

Associated Families

Sequences