Scaffold Ga0153703_1253

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1253
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19420
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.58%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008081	Metagenome / Metatranscriptome	339	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F044503	Metagenome	154	Y
F047062	Metagenome	150	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_125310	F001775	N/A	MMDREQTRIAAIFFLMGVIVAVILFPKKEIETVYKTTTKIEKDTIYVASTDTIYIPKTMIKTKVLRDTILLDSKPKISLFQASFPFEYGSTKVSGEVLGEVLKMTAINDYTIPVVTNTITETKTETIVVKPKGIYLGAGINSVLDPSVKVGYLDNKYLFQYGYQPLEKIHTLSVSKKLF*
Ga0153703_125311	F036704	N/A	VLAKNYSDMWIEIDVMLSGSTMDWKELGLDVKHEFVRRMVRVQDIAYVQELVHDIQIIIFYDKTSCLIRGEYQRIRDEILHLDQEEEDL*
Ga0153703_125314	F008081	N/A	MEESEILNPFGYGKASKVIDENRKPAEWWWDYLEMNEAIAENEFYILFEDGLLVKKGRSKFRTSQYLHGDRFKSFKQNYERD*
Ga0153703_125316	F047062	N/A	MNYNFEHYTDQEVDFTYDGIDYKWIGDYTIEYYGEDETEYTPAYGEMEVRINHTSSLMSYEDGAEIIPTASILMAVELEIERNQ*
Ga0153703_125326	F044503	N/A	MRRRYLTEYEKELIFERWQDRIPTKVIALELGVSYMCVYNQLKKRYLVG*
Ga0153703_125328	F093880	AGAAG	MESKQIQEMNDLNRDIWGMIVQAQKTKNWALIEINLKRLYSLQKKYINLINLMDYEVKGTTLALKDEIRVRNKFEKQWFRDVAERNGHYKAMKENIDKYFKDEEIG*
Ga0153703_12533	F029443	N/A	MTLSELVAKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVRPAQYSTSVIRYRVVLLFADLLTEDKSNRLQIQSDQMLVALDVLAKLKLDTAYSFNPSTNATIEFFQERFDDFTAGVSIEIEISSPVPLNLCAIPTT*
Ga0153703_125334	F005529	N/A	MPRTLPISKPDYSLEMRFKTSSGEWSQWINKGKGLFQSIEIVQHQIRLITAPHRGNEIEVRFTWNGWLCDYSGQPTGEVIKFK*