Basic Information | |
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Taxon OID | 3300011336 Open in IMG/M |
Scaffold ID | Ga0153703_1160 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 24657 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (72.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F038150 | Metagenome | 166 | Y |
F051781 | Metagenome | 143 | Y |
F056421 | Metagenome | 137 | Y |
F057202 | Metagenome | 136 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153703_116010 | F057202 | AGAAGG | MTLTQQLKRIIRRLTPVEMAAAELADAELHRLEAHTAVEYATSVVSYEDARIKRLRKFLSDAEKAV* |
Ga0153703_116011 | F051781 | GGAG | MSILDEIKVNRTPTHIVQSASLELNQKTKEIMGAYVERQRRPGEVKAPENDLWQRGQYRTGDGDYTAQVPRAGSLVAFSLPSRGNKT* |
Ga0153703_116015 | F056421 | AGGA | MKDDDENLFAYGWLDTAIAIILALCTLAALFFALGYLL* |
Ga0153703_116023 | F038150 | GGA | MTDDDFRRLESKVDKLTDAVGKLILFEERQATQGERIGNVEVKIGIHDAALQRVDRKVDQWVNRGVGVWAAAAIVYSLVQFWKK* |
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