Scaffold Ga0153703_1114

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1114
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29369
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (58.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F060895	Metagenome / Metatranscriptome	132	Y
F083707	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_111410	F002869	GGAG	MSNKITAAMLDRKIAWCEQKQAEAKAAAIRHMQDFYFEKTRASVTEAWPESFNGPDLAQVLNVERVSYRIYYSQDNLTCRLFVFRPHCTPFETETMLGMGFVPAQDGDTENIPNQPVEEVEK*
Ga0153703_111425	F083707	N/A	MANMNKEIELVPGGGRYYRAMTFHWLVVAVLIVPVATALIVAIVNPLWFRSAMFDWVERGVNRLSQWRNYQKYRIYLGTDPRMWHTLKGDLK*
Ga0153703_11148	F060895	N/A	MNAELERLVRAAGAPEEVMTELWFAIFCQQFADLLIAEMEG*