Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1105 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1105 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	30854
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (85.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30854

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (85.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F001739	Metagenome	643	Y
F004432	Metagenome / Metatranscriptome	438	Y
F016520	Metagenome	246	Y
F032632	Metagenome	179	Y
F040586	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_110515	F001739	AGG	MTTFVTTITAMYTLQQPDPNYVVNVLWRVTGVSGTYSASVDGSTPFSSANQVGTFIPYDQLTEAIVIGWIPADAIASAQATVQGQINAHITPPVSPANTPLPW*
Ga0153703_110524	F001538	GAG	MIDTIKLFPTVQPSGYPDKHDLAQVKLEKQHERNKVNEIAKLKQTQLEDLEFEIYTKKVVQERLRMEIFQNRKLDIYA*
Ga0153703_110525	F004432	GGA	MVTKKPPAKVAPVKRRTPKPKAEQTINVTMAAPAPAPKTEAKKDDSTLGKVIGLIEWVDSPFKLFTVILLSFLAFAGWFAWDSRQVILHAITTQDKMPQLAKQEALLAPARSLMKDVDGVVLLVHKANLATNSRTTVLALNADGSREKAVEGTVTSLFNASADRNGAMVAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKEKPEDIAALKTRINLAATDMSED*
Ga0153703_110529	F040586	AGGA	MSDRHWRILQELGGAEWLRKQLDKKAKMPAKYYRRELDAPSKKEVND*
Ga0153703_110538	F016520	GGTGG	MNPTPACPQGIIEFECELEGVDLVCHLEYVPEELGSLDSRGLPDEPDYAETMELVSAYIKGTDIDIGHLLLQGLVDHITTTALEDYKNDDL*
Ga0153703_110539	F032632	N/A	MKHHKHFYYPEIKSARLTARAEPGLDLLTALAIGISLAALLVAWWSA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1105

Overview

Ecosystem & Geography

Associated Families

Sequences