Scaffold Ga0153698_1930

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1930
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10324
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019438	Metagenome	229	Y
F021243	Metagenome	219	Y
F046909	Metagenome / Metatranscriptome	150	Y
F068756	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_19302	F046909	GAGG	MKAPPGKGACLMMAKITYPRNQEVSWKWLLAWGFYDMYVDGWYGAKA*
Ga0153698_19303	F068756	GGA	MSEDPFGLAPIKKEGSVADPDAFTWEFACEACALKYQKWKERFDIQQKELRGEK*
Ga0153698_19305	F021243	GAGG	MNEEDEAFEQLALRQGQWDYSGQNTSGWRKKQIAHMDMHSHPAEFVHLHRNDTIEEVAKELETRFTGPFGRDTVQSFVAYIRGMKR*
Ga0153698_19308	F019438	GGA	MMETIFATIILGGIGFIVCGLVFVGLMHLWFWMDERGDR*