Scaffold Ga0153698_1835

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1835
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11306
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035216	Metagenome	172	Y
F055532	Metagenome / Metatranscriptome	138	N
F068742	Metagenome / Metatranscriptome	124	N
F094923	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_183517	F055532	N/A	MTQPDLFGALPPPPRKLTNLDLAKIAFTEFREALRSSIHQHPSDPRQLIQLEDDVQFALTSRFGHGPKNPGQLAALCIRGVDVFMNHHWEDGTPGTNGICRRCKRISK*
Ga0153698_18353	F035216	N/A	MITYIILSSIICTGAFAIGLGQRRERRRLGTMVQGAHIPHRLEQPISEIASLRMELSLRTLQLESERLESDRLRSIIRSTIR*
Ga0153698_18354	F094923	N/A	MNNHDPDLVARANRTMSAIRTMVRIILTTAILGLLWLLWRLCA*
Ga0153698_18355	F068742	GAG	MSNISISIDLKLIDQKKLKRMTRQNGQEAAFLDLIMIPTPGSQYGEWMIKQRSTKEEVEAKVQTPILGNGKTAVKWEGQ*