Scaffold Ga0153698_1485

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1485
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16401
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007169	Metagenome / Metatranscriptome	356	N
F011298	Metagenome / Metatranscriptome	292	Y
F020140	Metagenome / Metatranscriptome	225	Y
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y
F025688	Metagenome / Metatranscriptome	200	Y
F041765	Metagenome / Metatranscriptome	159	Y
F053245	Metagenome / Metatranscriptome	141	Y
F063489	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_148511	F020140	N/A	MTHKFAVVVERTFYDKIQNNSDFYLRVLVLDVIRALAPDEGSVDKYSSDIFYKCAKSIAKEVRMFEDENSFIFYLELSSGYLDDFFQEPLDDFE*
Ga0153698_148515	F063489	N/A	MNKRYIVRDREGAYQSAYNLALGKKQAYDWAMQCAKSVNGVIYYVEGDASKEQEVFRAPEPRRF*
Ga0153698_148516	F011298	N/A	MAHFVKLNVLDPGHDDLVNKTNRQYNTQLINLDMVVNVEQSHVHSLIFTKNNTMHPIRVKENLDEILKLSATQ*
Ga0153698_148527	F007169	N/A	MSYQLQFDFEKPEQKEQRLKGWHDQQVKLDKMFEGKANDYYIYNKYVDEFIDFLPYRLGWGLRSNYKELRWWIKCQYQKFRYGVSDDEVYSLETNIAKYMVPRLQYFKKKGKMGIPMKFLPSNYDDLQDEDREKAEKIGEKEINRILDEMIFAFDYLIDPDKYVTFPKSCSWDIKDKNYFNREKTLEAKQSWDEYTKTCEQLDTRKKQGLQLFVEHMDMLWI*
Ga0153698_148529	F022862	N/A	MKFTPQQYELICKTRDEIRSLNDKQHTLYDNLIKELNISIYAEDWMFDYIYNDSGSIDNIEARM*
Ga0153698_14853	F041765	N/A	MLNHKRIMEDSAAFFNKEVDKVILKVATAKTEKSRLKYLKQMLALRNRLSLEVKMLNDLDNF*
Ga0153698_148530	F024782	N/A	MIEESIERLRAYNKWRTGEDDRTMDEVGIKPSELTADIKNVCDELEKLINMYASRN*
Ga0153698_14858	F053245	N/A	MKNVTIKIGDRDLEVLTDIFKNESDFKPQAQQDLLIIEILKQVLNNPKNEIADIEV*
Ga0153698_14859	F025688	N/A	MKFILNIDGSNAGGKFLENYVGQEVHLDSLYKDIDINSPPLAILKTEDGKQHSVQLIDIRFINEFIFINCFVIQHDDKHGGKALLRLKPVCDLEKIVNP*