Scaffold Ga0153698_1362

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1362
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19391
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.88%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F009808	Metagenome	312	N
F025030	Metagenome / Metatranscriptome	203	Y
F051874	Metagenome / Metatranscriptome	143	Y
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F064723	Metagenome / Metatranscriptome	128	N
F099306	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_136210	F008815	N/A	MPNYTERTVLSKPRDFDQVANNAGSGGVVNNNVTETINNVTVTGSDIAIFNQEFLDTTSNILTWTQNSGKLPTTNLNASIHVYQNGQKLIESQYLITAPATITIDSNTHYDGSNYIVFAININ*
Ga0153698_136216	F052594	N/A	LEQIATKNYGLDKKQIALCEAMLTKYPKPIKTNNVVSSAATLVSFYNSLDENNRSYYEYMNPERMVSLLWQITKMNSEKEDVKESAVRLLNKIMVKIVVN*
Ga0153698_136217	F099306	N/A	MIQEKVIRKRIHNLQQIYFAESMKNRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNCN*
Ga0153698_136219	F009808	N/A	MKNNFNNQNFEWLFQDITSSMPKIIFTGIIFTYLITAALNVYFLPLPLMLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQSTGAEFYAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPKQRRRRVVRETTTTNISSTQPIKFTMAVCFMFAVYLLPAQSNHFMAFNWMSVEKIGGDKLERTYYDRHEDKHYIDTITTDFLSSWNFWDGYTLPVSDNDLFMTYGTQTIKYNKKTKLWSYKGKTMDYVDLLKFLVRYTRKNFIKKKVQW*
Ga0153698_13622	F064723	N/A	MFISQTKLNRLKRLEGKTNKKGQPLAISNFAESVIELDNIMQQITITKRKEIVKQAEPIALAAYKNLVPKSNKPHKFYIKGKGLRYNIMPGNLQRSIQIVSEVQNFKYLTSAIGPLYKDAGKGVTLGSESKTDGFYAHMVYGNTKAWVKRVKNKAERASQMAVIDKMSGEALKMAKQYPRKFWEL*
Ga0153698_136220	F054865	N/A	MEVKEKRYVIRYKEGTVSVAGNNIEEAIEEFKKLRIETSAKEITIVPADEMYKRREEIFREE*
Ga0153698_136229	F051874	N/A	MTTLELIEQKVEVALQAINNLLPEGYYTTNTLSSTDFGNSGYILVKKICPINYIVDICKIRISDHYATNRGRQDTEIMIDLVRFNIDQLITLVDRKINPSNYEQVEIRTLTDQVMESNFEVGKKPYTTLSEPIFLGEVTTKKGNTAHRYSWLKEEVRYEWVKKAN*
Ga0153698_136230	F003786	N/A	MYGIDGDISFYANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDEDIKFYGKANMHTIGKILNGYMVYRRRIIASHDNEVAALRLQAQMEERGKAEREKLYAEFPTMIKEFAGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESMDLMTIRSHAKKIEQGNTKRAVVIAQKLAVWRKVIKK*
Ga0153698_13624	F025030	N/A	MKLRLLKEWNGKAPGKVGVFLSEYGEQMIKDGIAELLDEDFVVEQMPKKEEVKQDPVYIPIPVPNSYFNEEADEEAINKPKNK*
Ga0153698_13626	F006590	N/A	MKTIVIANTTIPIKFGMFVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAKGEKCPYTLQSFCDLVDTDMGGITRIMEMISNEISPPEDESQKNVVAKEENSLLNTSSAFVSEF*