Scaffold Ga0153698_1297

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1297
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21872
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005113	Metagenome / Metatranscriptome	411	Y
F014606	Metagenome	261	Y
F036674	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_129712	F036674	N/A	MAAVRDFDSTQLQADYDGIMAQAGVTFTYFGTTVTGIWSSSRNMFDEFSEQRREEEKFTVFFTTNQVVTTPKQSQTCARAGITYFLEQVRFDSEGTGCEFDICRDI*
Ga0153698_129714	F014606	N/A	MSTRTDIRNAIGNKLTVAAVCVTANLIRGRNNTISSTSFPACAVYAINEDIEVRSLAPNNRTQYRQLQVQVDYFTGEVAGSTTIIDDLFDIGSAAVEAAVLADVTLNGVCRDLHLTNVAYSIEPDEERRWGTARHTFNCIYLTTD*
Ga0153698_12973	F005113	N/A	MTKDEHKNVVIQQLQQQSIGVLIDSLAAALAEIEALKAKLEPVRDERL*