Scaffold Ga0153698_1249

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1249
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24740
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y
F006139	Metagenome / Metatranscriptome	380	Y
F009743	Metagenome / Metatranscriptome	313	N
F048950	Metagenome	147	Y
F085392	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_12491	F001326	AGGCGG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYTVRALPQYLFLGIDTQGDLLYDYQIPIADQVLYAKTASDVERTAATGTVANDPVCTWVTAAQVMTYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA*
Ga0153698_124910	F006139	N/A	MDTQIVVALIGGGFLVLVALIGKIGSDNKKDHGQVHQTLGRIEQKIDNHVENHQ*
Ga0153698_124911	F001872	N/A	MNEFIRQVLHHSNGAFVNLGSWGQRDVKGKPGTLSVHATGRAWDAGFTTSEKNPNASRKTALPFIEKMVANANDLGIQMVIDYFPKEYGRAWRCDRQVWKNYDTKTVSGAPGGRWFHIEISPQAADSVIWVKAAFLKVFGEIPPKA*
Ga0153698_124914	F002794	N/A	MERNKMSEGTAYNQGELTEETRKLVLDSTANANHTMAIFNLIDDIMAVSKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAHS*
Ga0153698_124915	F002421	AGGAG	MKTCTICKGSIAYPDIQGKTHFVCDGRVPVRKQAPFIQGMLASQSSADARWTREEQNKVDAAILHVARTKGFFTSDDIWKYLGDQFPVTKGIAGRLNAAARRGHIRNTGELAYAQRGGAHDHAQRLSVWAGI*
Ga0153698_124918	F048950	GGA	MTLEELISAIERLQTVYNSMVEEDQREAKQYVRWAIKRLADKAYMAAL*
Ga0153698_124925	F085392	AGG	MSFVIASERLGKIGDPFTPKDGINIDGLLAGGFIVRAEVSTTEEEKPAKTKPKKASKE*
Ga0153698_124933	F006139	N/A	MDAQIVVALVGGGFAVLVALISKIGSDNKKDHGKVHQILGRIEEKIDNHVENHN*
Ga0153698_124935	F001872	GAG	MNEWIKQAIAASNGSLWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKHPQASRKEALVFIDKLVANANDLGLQCILDYVGPNGRAWRCDRYAWKVYDKPTLHGVPGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA*
Ga0153698_124938	F002794	GGAG	MSEGSAWNQGELTEETRRMVMEQAMNTNHAMAIFGLMDDILAVSQNPHASIIRRLRTMKNQLSLNDPMPLYDVTTLDQAIKALEAHS*
Ga0153698_12494	F009743	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTSPLYSDYCCWMHTILKIKGEQVGDNWREWISKNPDIDIMPVLDETDPNPTDAAPTAAN*