Scaffold Ga0153698_1241

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1241
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25079
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003640	Metagenome / Metatranscriptome	475	Y
F004448	Metagenome / Metatranscriptome	437	Y
F047641	Metagenome	149	Y
F095152	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_124112	F003640	GGA	MTLAVVYDPRYHDFQSWAALMCEAYAGQQLIIPDALTDWKEWAAGLKAIDIFTNEGIPGPYIFDDWQDWAQALVGAVNASIDI*
Ga0153698_124113	F095152	N/A	MNINFIELLNKVARVARPAHHEFVPIVSMEEKFEETCFDSLDMLMIGMFMGMIYDIDDEIAKDFQPETVQELYTFVELNKKRDPESIEWALEQIK*
Ga0153698_124128	F004448	AGGAG	MTKRETWVAFLKDMLRPRTLEELIDIEMRDAYLSKMQAEKSLEYATSVVDYNRQRIRRLEEKLLELRTHANEKV*
Ga0153698_12413	F047641	AGGA	MEKLQISTQLLNSIMGYLGTRPYQEVFQLIEAIQKEAKEQPTPESVE*