Scaffold Ga0153698_1219

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1219
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26971
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (34.69%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F007798	Metagenome / Metatranscriptome	344	Y
F009604	Metagenome / Metatranscriptome	315	Y
F019824	Metagenome / Metatranscriptome	227	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N
F045085	Metagenome / Metatranscriptome	153	Y
F079812	Metagenome / Metatranscriptome	115	N
F084133	Metagenome / Metatranscriptome	112	Y
F087174	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_121910	F007798	AGG	MKDTTLKQLVRDRKGQPRGMVIATVIDGTIRFGWSHTNTKAGDRFDKCKAFTIALGRAENGWGPKTNVPVSTVKILNKMIDRSVRYYKNVPVYGI*
Ga0153698_121913	F079812	GAG	MDGKNSRIGYVKDSGSVIYAHGPNGENVGYYNKSNDTTFDRSGKRYGFGDLTNALVFEAARKN*
Ga0153698_121915	F039627	N/A	MTASFYKTVYQRKFNEMPRWKQLAIVEDSTRNNWSGLLTDFVKAVIEEAEKEYANSKTNEKIPSVEYKKDLENKFKKTIKKKS*
Ga0153698_121916	F009604	N/A	MIECGCGNEIHPERYELGYKICLPCGEKSAKRSQKFGYLHFGHKTAGSIVITTKKAFDNYTKVSYRKGKASNMAYASRLSTSF*
Ga0153698_121917	F023346	N/A	MKHTPTIVSKNIIFTYARKIRNVQSEQIDPYIKLIEQELIKIYPELKDREDNALNWAYDIINSASNTDVSDTLTRLDDIITNERKSQWVCDYCGKNTYNDDCEYLFGKNHMGCALEDDIKNREHSDPDYILDARHRKITEIESKLNHYESELDKLQSELRRLSRGYPHEPTN*
Ga0153698_121918	F045085	N/A	MNKVIDLTVGLLFGSIFAIGLLIVLTIFFVVLIPFIYYFTLKEVLKALTKTK*
Ga0153698_121920	F001840	GGA	MKDQDSIFLICDCFSHGLLVEKFKDEEEVSLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFIILNTENQKQLKDFLNEVQKF*
Ga0153698_121922	F006260	N/A	MEVDLTIKDKAIPPIIIQHDDLKFDGKTITIPSYYVNIILDYIKDYDVDGVPEVDIEDYIAFRNFLYDIQEHKNKGN*
Ga0153698_121940	F087174	N/A	MSYYIKDTTINKVITFNDINEVVKYLEGLCIKKTKKQRKDFMYDMSELGHGYDDPNGINFTNLMSDHFEVGALKKDGRLVRTNIHELVRNNKYRNEMGD*
Ga0153698_121948	F084133	GGA	MFNNKIQGMNQTPNVNFGLKDTQSVQCPECQGVVFQNGVMFRKVSKILAGTDKDALVPINIPYCVNCLEPLNELLPSELKQAKFSLEQ*
Ga0153698_12199	F019824	N/A	MDKYITDNFTGSIDDLLNHCTNLDLDKVEEQVKVEEKEACIKIIMKEASCDELEANVIYNEILLTETKTTVDKMVADGLLYVSGHNEDGEPLFQLTELGKAVRNELGDGK*