Scaffold Ga0153698_1180

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1180
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30608
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (21.57%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F041777	Metagenome	159	Y
F049635	Metagenome / Metatranscriptome	146	N
F063704	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_118013	F023350	N/A	LTLEHYIEGHYKKFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYILEDFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKTQ*
Ga0153698_118017	F041777	N/A	MKKTLLFIAMLFAGMLIAGTIDEQTRQLEQTPNTTNK*
Ga0153698_11802	F028175	N/A	MAITIEEQPYQYTPIGQRLMIVCSSTNVSNAGFRFVFDFGSFQVNVQPNAANKGILDLAPIFREKLEHEGGTASNAAIEREVTSVAFISCTIKEGWLVDGVFEVSGAGMADIDDVYAFLAEYQIADGYRPNPNFRYALDGTDKYLLSERTKDTHKWSEAAGRGLSSEWVYIPTRLSDFGLLYSVSNNGLLADNEATDLFVSTYDNSGTLIEAINYTISTDLNSVTRLGAYPSNLIADAVNFTNVKYYTVQAGASITPPIYTPVSRVYCFYLIDDDCRFDNVRLGWSNTVGGVDYFNFTKKSELSYNYERKQYQKVVGNYNASTFSFSTFDRGITDRYVNTTKGLQINSDWVSVGEFNLLQTLCRSNDVYIINDDGTMTPVLVDAQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0153698_118023	F049635	N/A	MNKQIYSTPFGRLVKINFKTLTNFKNVLRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKHINEEND*
Ga0153698_11803	F036240	AGAAG	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLKIKGSSINVSVYAKGKAGKYFLFRENGVNGTQKSQGAPYSFKRGSGSKPAKGQMSPMQQAIYDWMSIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAMENIWDEYESKVVEAYGKDFTAVIENQLNDI*
Ga0153698_118035	F019140	N/A	MKQTPLYESLKMTYEREREIVNSIATYFQQAKPVGDILLELSQRKDMNAKEKVYLALMIGTMMTRNNEEK*
Ga0153698_118037	F021113	AGGA	MRKNLFAALLLFIFTSLIWLVLCWHWWGKQSIKDVHVEVQKQDSIINYNACEYDRLLQEQIELYKQLRTYEDAQLKAKTTYQRTRDSIIVRDTITIVDVVRLVNSCDSVIASDSLIIATYEQQMGIQEEKINNLTEVISAHEEKEQLLSEEINSLNVEKKKLEKQKKRRNSALIVTSSVAILSTFVLSILL*
Ga0153698_118039	F027518	N/A	MNTENEIALIHEELQDMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQFILKFL*
Ga0153698_11804	F063704	N/A	MTLTKYRMITENGYIETLNEQEAIEWGKYTTVTEEVPDDNG*