Scaffold Ga0153698_1172

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1172
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30969
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (77.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058136	Metagenome	135	Y
F061842	Metagenome	131	N
F063684	Metagenome	129	Y
F066712	Metagenome	126	N
F073247	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_117224	F066712	N/A	MFNFNPDEKRVQLAALLQDPTQPYRKYSGPLGAGPSAGSGMNSEIMKMLMQDKQKKAPVVEKSTQYDPASQNFTPSDY*
Ga0153698_117237	F058136	GAGG	MIQTNEEKVAAAIAYLRSRDKYLLDGCKWVPTPAEKTDVKKTMQQYREAVK*
Ga0153698_117238	F061842	GAG	MTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLELALAYVKYMETRSK*
Ga0153698_117241	F063684	GGAG	MIIETATISTGELQEALQNYCEVNGGIPKTVIVQSYAKQIVVSLEPGGMVTADEFNHAATCA*
Ga0153698_117245	F073247	N/A	LSRKRAEVTERDRADALTDIVDEVMDYGRYPRRGRAQVDLYEFVSEHLDTSFAFELVVAVLSSDKETVQTRISRLYDQVQEMLKKHYIDTDIVEELAQEIADASEE*