Scaffold Ga0153698_1135

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1135
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33468
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (77.36%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F004762	Metagenome / Metatranscriptome	424	Y
F005503	Metagenome / Metatranscriptome	398	Y
F016643	Metagenome	245	Y
F043396	Metagenome	156	N
F097344	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_113527	F097344	GGAG	MFTVLELAGAVILASIGWFLVGWSIGFKEGVKDGFNRGRAAGLRAATNYVKSL*
Ga0153698_113529	F043396	N/A	MRDMGINKITLTRDEEIQAAAAAFICEFRGEENFYFHDQAMRGNIHDSIKRTAEAFGAEIAAARFFGIADFKIELDKFKIRADIGNRIEIKHTRWLDGHLILNPRDRADDLAVLVVGESPIYYVKGWIPIKAAKTSRFKHDKTESWWVSQHNLNSMENLKESNYGQIEI*
Ga0153698_113541	F016643	GGTGG	MTLFNPVWRINIGGIIYTNYVLANLSTTSGRTNIYEQANAGYVSLELINLDQSNIDIEINDAVTIELQDSTATFVPIFGGTVVDLGIGIAASGVVGINQTVRITAVGALARLPKALTDGVLTQDFDGDQILTILTDLLINSWNEVPAALTWATYDATTQWQDAENTGLGEIDTPGSYELAARSSSTIDVYSLVSALATSGLGYLYEDAQGLISYASADHRSIYLANNGYTDLSAAQALANSLFVQTRAGDIRNEIVIKYGINSSSEVTDTDATSIASFGRLAQIITTTIKHQADAESQAAFYLKLRSYPQANFNQITFELTNSEIDDADRDALINIFMGLPLRITDLPLNMASGTYLGFVEGWSWRASYNSVSVTAIISPLAFSLQAMQWEDVSVLEAWNTISGSLNWADALVVA*
Ga0153698_113543	F004762	GGAGG	MALAAEVLQFLIPTGGWVISGDKYEGITFIEAQPITKAQFEAGFAQYDAWKAEQDSKTEADKKAAQAKLAALGLTADDLKALGL*
Ga0153698_113547	F005503	GGAG	MTTSEIGLFVLMAIACILWAICSYAVGYKEGHREGYQRGKAVGRHISAKAVK*
Ga0153698_113548	F001897	AGGCGG	MAFMDNYEGNKERTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAFRNQLETQPAGVDYAHGFLAAYSDKMRRWMIEDTCTSALMRVMALVLGGAEKATAEVMALVKTETPAADYDYWTTKHGDVPSYKTRDEAEQAEPIAWDIPAASAPSCSHGSMRWNQSKPDAPKAWAGYFCNEKIKEKQCKPQWFVLTSDGTFKPQV*
Ga0153698_113549	F000403	N/A	VGGIQVSDYIEIINPQTRIAKVLLEGKVVAEYRVEQCDKCSRLMKFDQFGYQKGYDRTENIIWFCGGCR*
Ga0153698_113550	F000903	GGAGG	MINRVEEVQCIIAAIQHCHDRNADHPTRFQKNLSWFEYVAQMAESMAAELVVAKSLGYDYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRADRDVAVLVTGHSPKLHIVGWMPVGVAKRPRYKNTSQNNWTVPQTNLQPIETLARSNYAHPVV*
Ga0153698_11357	F000403	GGTGG	MSEFVEIINPRTMTCKLMREGVIVAEYKVEQCDKCAMIVQLDSLGYQKSDPIENVIWFCKGCR*