Scaffold Ga0153698_1106

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1106
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35852
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F002386	Metagenome / Metatranscriptome	565	Y
F006696	Metagenome	366	Y
F024973	Metagenome / Metatranscriptome	203	Y
F025266	Metagenome	202	Y
F095382	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_110613	F025266	AGGA	MRHPEPEIVTLYRNTLRAEPPRVCHTCDHYSKEGICVKFSEAPPPEFANEPGGCALWEWEIPF*
Ga0153698_110622	F006696	AGAAGG	MKFIKFLKDYYRDLTPAEVIARELAQAHLDRLEAEGAVEYAQAVLDMNMTRIERLNARLGEYK*
Ga0153698_11063	F002386	AGGA	MKFAFIPKASYTIGQVIQVHGKPMRVESYLHTGKNVTVCTLPDAPRFERIVCVCTDAPAIEGVTA*
Ga0153698_110632	F024973	GAG	MIWTLVLVTGINMNSIMVVGYFEVESACQRAAKEWRDLGYKVGCVQTQKK*
Ga0153698_11065	F095382	GGAG	MLTLHKSAHYAAQLLNNSGLVIESTRKAGGVQLRPDHPQYGEYVDALRTAIDTAEADALCRALLN*
Ga0153698_110653	F000961	N/A	MNIPEIDPVRYGVLWQKVQDYERRFDEMSAKIDKMESSIETLVAMANQGKGGFWMGMVIVSAVGSVIGYFVHLFGKS*