Metagenome Family F095382

Basic Information
Family ID	F095382
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	65 residues
Representative Sequence	MLTIHKSAHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALCKALLN
Number of Associated Samples	83
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	83.18 %
% of genes near scaffold ends (potentially truncated)	20.00 %
% of genes from short scaffolds (< 2000 bps)	79.05 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (53.333 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (20.952 % of family members)
Environment Ontology (ENVO)	Unclassified (67.619 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (68.571 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100. 1JGI24028J26656_10061183 2JGI24028J26656_10075782 3JGI24028J26656_10125864 4JGI24028J26656_10142402 5JGI25908J49247_1000521113 6JGI26470J50227_10155154 7JGI26470J50227_10546671 8JGI25913J50563_100070413 9JGI25930J51415_10261712 10JGI25930J51415_10568993 11Ga0007811_10010506 12Ga0007879_10329281 13Ga0065861_10646791 14Ga0065861_11306802 15Ga0066223_12498212 16Ga0065168_10644122 17Ga0065167_11034412 18Ga0007804_10147793 19Ga0007797_10007767 20Ga0007795_100489491 21Ga0068876_102500202 22Ga0049081_100033368 23Ga0049081_100989322 24Ga0075470_100280712 25Ga0007876_10808363 26Ga0007876_10896951 27Ga0079301_10266108 28Ga0070749_102156721 29Ga0075464_101923702 30Ga0075464_107661411 31Ga0075473_101878672 32Ga0075110_10533882 33Ga0079302_100251014 34Ga0070747_12870871 35Ga0075458_100440122 36Ga0114876_10599823 37Ga0105103_108507702 38Ga0114962_100675624 39Ga0114962_101291432 40Ga0114962_105276852 41Ga0114963_103119563 42Ga0114963_106324142 43Ga0114981_105316451 44Ga0114975_100404372 45Ga0114974_100577284 46Ga0114976_100928421 47Ga0114976_101080221 48Ga0114976_102469542 49Ga0114964_100762963 50Ga0114960_103632641 51Ga0136644_104584303 52Ga0133913_116986963 53Ga0133913_120148835 54Ga0139557_10344911 55Ga0153698_11065 56Ga0157208_100028264 57Ga0164296_11097492 58Ga0136642_11142041 59Ga0136641_10884332 60Ga0119954_10074491 61Ga0181363_10146325 62Ga0181352_10592774 63Ga0181356_10831092 64Ga0181359_11277913 65Ga0211735_103127042 66Ga0181353_10276684 67Ga0181353_10317192 68Ga0181354_10355491 69Ga0222646_10131910 70Ga0222646_1032318 71Ga0222631_10143452 72Ga0208738_100014810 73Ga0208738_10429321 74Ga0208871_10137173 75Ga0208387_10725193 76Ga0208876_10188091 77Ga0208376_100077312 78Ga0208546_10286972 79Ga0208147_10274746 80Ga0208147_10311082 81Ga0208134_11613822 82Ga0208498_10361571 83Ga0208644_13166711 84Ga0208788_10293026 85Ga0208975_10043355 86Ga0209188_10964754 87Ga0247836_11304864 88Ga0209189_11133134 89Ga0209084_10809082 90Ga0209084_12109482 91Ga0209296_11605573 92Ga0209134_1000017817 93Ga0209134_100203744 94Ga0209829_101889223 95Ga0247723_11068321 96Ga0247843_11865043 97Ga0315899_114142802 98Ga0315904_109569012 99Ga0315904_114073391 100Ga0315274_101982281 101Ga0315284_115501282 102Ga0316226_12896483 103Ga0316221_10301765 104Ga0335002_0422365_183_380 105Ga0335036_0366029_64_261
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100. 1JGI24028J26656_10061183 2JGI24028J26656_10075782 3JGI25908J49247_1000521113 4JGI26470J50227_10546671 5Ga0007879_10329281 6Ga0065168_10644122 7Ga0068876_102500202 8Ga0075464_101923702 9Ga0075110_10533882 10Ga0114962_100675624 11Ga0114981_105316451 12Ga0114976_100928421 13Ga0133913_120148835 14Ga0208498_10361571 15Ga0315284_115501282
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1Ga0007876_10896951 2JGI24028J26656_10061183 3JGI24028J26656_10075782 4JGI25930J51415_10261712 5Ga0007811_10010506 6Ga0065168_10644122 7Ga0068876_102500202 8Ga0075464_101923702 9Ga0114876_10599823 10Ga0105103_108507702 11Ga0114974_100577284 12Ga0114976_101080221 13Ga0114964_100762963 14Ga0114960_103632641 15Ga0133913_116986963 16Ga0153698_11065 17Ga0157208_100028264 18Ga0136641_10884332 19Ga0181356_10831092 20Ga0181354_10355491 21Ga0222646_10131910 22Ga0208546_10286972 23Ga0208134_11613822 24Ga0208644_13166711 25Ga0209189_11133134 26Ga0209134_1000017817 27Ga0315274_101982281 28Ga0315284_115501282 29Ga0335002_0422365_183_380 30Ga0335036_0366029_64_261
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.66% β-sheet: 22.58% Coil/Unstructured: 53.76%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00535	Glycos_transf_2	3.81
PF09339	HTH_IclR	0.95
PF08401	ArdcN	0.95
PF13662	Toprim_4	0.95
PF00145	DNA_methylase	0.95
PF01381	HTH_3	0.95
PF13560	HTH_31	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.95
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.33 %
Unclassified	root	N/A	26.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	6.67 %
Unclassified	root	N/A	26.67 %
Viruses	superkingdom	All Organisms → Viruses	66.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.67 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	53.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.33 %
Unclassified	root	N/A	26.67 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	3.81 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	53.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.86 %
Unclassified	root	N/A	26.67 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.33 %
Unclassified	root	N/A	26.67 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.81 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	53.33 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	53.33 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.33 %
Unclassified	root	N/A	26.67 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.95 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.81 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	51.43 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.33 %
Unclassified	root	N/A	26.67 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.81 %

Name	Rank	Taxonomy	Distribution
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	1.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.33 %
Unclassified	root	N/A	26.67 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.81 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	51.43 %

Name	Rank	Taxonomy	Distribution
Acinetobacter baylyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	1.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.33 %
Unclassified	root	N/A	26.67 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.81 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	51.43 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300027728\|Ga0247836_1130486	Not Available	1130	Open in IMG/M
(restricted) 3300028569\|Ga0247843_1186504	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	807	Open in IMG/M
3300002091\|JGI24028J26656_1006118	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1751	Open in IMG/M
3300002091\|JGI24028J26656_1007578	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1473	Open in IMG/M
3300002091\|JGI24028J26656_1012586	Not Available	977	Open in IMG/M
3300002091\|JGI24028J26656_1014240	Not Available	884	Open in IMG/M
3300003277\|JGI25908J49247_10005211	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4157	Open in IMG/M
3300003375\|JGI26470J50227_1015515	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1782	Open in IMG/M
3300003375\|JGI26470J50227_1054667	Not Available	684	Open in IMG/M
3300003431\|JGI25913J50563_1000704	Not Available	6739	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.19%
Terrestrial	Environmental → Terrestrial	3.81%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	3.81%
Freshwater	Environmental → Aquatic → Freshwater	78.10%
Marine	Environmental → Aquatic → Marine	14.29%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.81%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	14.29%
Ice	Environmental → Aquatic → Freshwater → Ice	0.95%
Lake	Environmental → Aquatic → Freshwater → Lake	32.38%
Lentic	Environmental → Aquatic → Freshwater → Lentic	39.05%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.90%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.81%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.86%

Habitat	Taxonomy	Distribution
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.90%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.90%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	36.19%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.48%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	14.29%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	11.43%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.86%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	16.19%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.76%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.81%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.86%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.90%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.90%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.95%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	20.95%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	13.33%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.95%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.95%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	3.81%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.86%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	0.95%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	2.86%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.90%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental	Open in IMG/M
3300003787	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09	Environmental	Open in IMG/M
3300003813	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300004684	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (version 2)	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24028J26656_10061183	3300002091	Lentic	MITIHTSSNYSAHLLNSSGLVIESTRKRGGVQLRPEHPQYGEYVDAIRTAIDSDEADALCRALLN*
JGI24028J26656_10075782	3300002091	Lentic	MSAYTIHQSAYYTANLMSCGLVIESTRKSGGVNLRHDHPQFAEYVDALRTAIDDSEADALCKALLN*
JGI24028J26656_10125864	3300002091	Lentic	MITIHNSSNYSAHLLNSSGLIIESHRKTGGVQLRPEHPQYGEYVDAIRTAIDSDEADALCRALLN*
JGI24028J26656_10142402	3300002091	Lentic	MSAYTIHQSAYYTANLMSCGLVIESTRKAGGVVLRHDHIQFGEYVDALRTAIDDSEADALCRALLN*
JGI25908J49247_1000521113	3300003277	Freshwater Lake	MLTIHKSSHYAAHLSTSGLIVESTHKSGGKLLRFDHLQFNEYVDALRTAIDNDESDALCRALLKD*
JGI26470J50227_10155154	3300003375	Freshwater	MITIHKSAHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALCKALLN*
JGI26470J50227_10546671	3300003375	Freshwater	MLTLHTSSNYSAYLLNNSGLIIESNRKTGGVQLRPNHPQYAEYVDAIRTAID
JGI25913J50563_100070413	3300003431	Freshwater Lake	MLTIHQSAHYAAHLLNSSGLIVESTHKRGGVQLRPDHPQYAEYVDALRTAIDSKEADALCKALLN*
JGI25930J51415_10261712	3300003499	Freshwater Lake	MSAYTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFTEYVDALRTAIDDQEADSLCRALFN*
JGI25930J51415_10568993	3300003499	Freshwater Lake	MSAYTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFAEYVDALRTAIDDQEADSLCRALLN*
Ga0007811_10010506	3300003787	Freshwater	MLTLHTSSNYSAYLLNNSGLIIESNRKTGGVQLRPNHPQYAEYVDAIRTAIDSKEADALCKALLN*
Ga0007879_10329281	3300003813	Freshwater	STHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALCKALLN*
Ga0065861_10646791	3300004448	Marine	IHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFAEYVDALRTAIDDQEGDALCRALLN*
Ga0065861_11306802	3300004448	Marine	MLTIHQSAYYAAHLLNNSGLVIESTRKAGGVQLRRDHPQFAEYVDAFRTAIDADEADALCRALLTA*
Ga0066223_12498212	3300004461	Marine	MLTIHKSAHYAAYLLNNSGLVIESTRKAGGVQLRPTHPQYAEYVDAIRTAIDSAEGDALCRALLN*
Ga0065168_10644122	3300004684	Freshwater	MITIHTSSNYSAYLMNNSGLIVEHNRKKGGIQLKPNHPQYCEYVDALRTAIDSKEADALCKALVQA*
Ga0065167_11034412	3300004693	Freshwater	MITIHSSSNYSAHLLNSSGLVIESTRKKGGVQLRPEHPQYGEYVDAIRTAIDSNVADALCRALLN*
Ga0007804_10147793	3300004770	Freshwater	MLTIHKSTHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALCKALLN*
Ga0007797_10007767	3300004771	Freshwater	MLTIHESAHYAAYLLNSSGLVIESKRKAGGVQLRPTHPQYAEYVDAIRTAIDTAEGDALCRALLN*
Ga0007795_100489491	3300004773	Freshwater	MITIHSSSNYSAHLLNSSGLIIESTRKKGGVQLRPEHPQYGEYVDAIRTAIDSNEADALCRALLN*
Ga0068876_102500202	3300005527	Freshwater Lake	MLITIHSSANYTAHLMTSGLIIESTRKAGGVQLRHNHPQFNEYVDALRTAIDDKEGDALCRALLN*
Ga0049081_100033368	3300005581	Freshwater Lentic	MITLHKSAHYAAHLLNNSGLVIESTRKSGGVQLRPDHPQYGEYVDAFRTAIDAAEADALCRALLN*
Ga0049081_100989322	3300005581	Freshwater Lentic	MLTIHKSRHYAAHLSTSGLIVESTHKSGGKLLRFDHIQFNEYVDALRTAIDNDESDALCRALLKD*
Ga0075470_100280712	3300006030	Aqueous	MLTLHESANYCAYLMNSSGLIVQSTRKTGGVQMRADHPQFAEYVDAFRTAIDAREADALCKALLN*
Ga0007876_10808363	3300006071	Freshwater	MLTIHSSSNYSAHLLNSSGLIIESNRKTGGVQLRPDHPQYAEYVDALRTAIDSKEADALCKALLN*
Ga0007876_10896951	3300006071	Freshwater	MLTIHKSAHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALCKALLN*
Ga0079301_10266108	3300006639	Deep Subsurface	YYTASLMSCGLVIESTRKAGGVNLRHDHPQFAEYVDALRTAIDDDEGDAICRALLN*
Ga0070749_102156721	3300006802	Aqueous	MTFTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFNEYVDALRTAIDDKEADALCKALLN*
Ga0075464_101923702	3300006805	Aqueous	MSAFTIHKSQYYAAHLMSCGLVIESTRKAGGVNMKPDHPQFADYLEAFRSAIDLHEADLLCKALLS*
Ga0075464_107661411	3300006805	Aqueous	MLTIHKSTNYAAYLLNSSGLVIESTRKAGGVQLRPDHPQYADYVDAIRTAIDSAEGDALCRALLN*
Ga0075473_101878672	3300006875	Aqueous	MSAYTIHQSAYYAAHLMSCGLVIESKRKSGGVNLRPDHPQFAEYVDALRTAIDDSEGDALCRALLN*
Ga0075110_10533882	3300007074	Saline Lake	MQTIHTSKYYNAYLLHHSGLIIESTRKTGGVQLLITHAQYDDYVDAIRTALDTEEADSLCKALMT*
Ga0079302_100251014	3300007165	Deep Subsurface	MSAFTIHQSAYYTASLMSCGLVIESTRKAGGVNLRHDHPQFAEYVDALRTAIDDDEGDAICRALLN*
Ga0070747_12870871	3300007276	Aqueous	MITIHKSSNYAAYLLNSSGLIIESTRKAGGVQMKPDHPQYGEYVDALRTAIDSQEADLLCRSLLN*
Ga0075458_100440122	3300007363	Aqueous	MSAYTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFADYVDALRTAMDDSEADALCRALLN*
Ga0114876_10599823	3300008448	Freshwater Lake	MSAFTIHKSEYYAAHLMSCGLVIESTRKAGGVNLRHDHPQFNEYVDALRTAIDDDEGDALCRALLN*
Ga0105103_108507702	3300009085	Freshwater Sediment	VTIHQSSNYAAYLLNSSGLIIESTHKSGGVQMRPDHPQYAEYVDAFRTAIDSKEADAICRALLN*
Ga0114962_100675624	3300009151	Freshwater Lake	MTDTAISCTPLTFKGNTMLTIHKSANYAAYLLNNSGLVIESTRKAGGVQLRPTHPQYAEYVDAIRTAIDTAEGDALCRALLN*
Ga0114962_101291432	3300009151	Freshwater Lake	MLTIHKSANYAAYLLNSSGLVIESTRKAGGVQLRPDHPQYADYVDAIRTAIDTAEGDALCRALLS*
Ga0114962_105276852	3300009151	Freshwater Lake	MSAYTIHQSAYYAAHLMSCGLVIESTRKQGGACLRHDHPQFGEYVDALRTAIDDSEADALCKALLN*
Ga0114963_103119563	3300009154	Freshwater Lake	MITIHSSSNYSAHLLNSSGLVIESTRKKGGVQLRPEHPQYGEYVDAIRTAIDSNEADALCRALLN*
Ga0114963_106324142	3300009154	Freshwater Lake	ANYAAYLLNNSGLVIESTRKAGGVQLRPTHPQYAEYVDAIRTAIDTAEGDALCRALLN*
Ga0114981_105316451	3300009160	Freshwater Lake	MLTIHQSANYAAHLIQSRLIIESTRKTGGVMLHIDHPQFAEYVDAFRTAIDTDEADALCRALLN*
Ga0114975_100404372	3300009164	Freshwater Lake	MSAYTIHQSAYYAAHLMSCGLVIESTRKNGGVVLRHDHVQFAEYVDALRTAIDYSEADALCRALLN*
Ga0114974_100577284	3300009183	Freshwater Lake	MLTLHTSAHYAAHLIQAGLIVESTRKSGGVVLRIDHPQFAEYVDALRTAIDTHEADALCKALLN*
Ga0114976_100928421	3300009184	Freshwater Lake	MLTLHKSAHYAAHLLNNTGLVIESTRKSGGVQLRPDHPQYGEYVDAFRTAIDAAEAD
Ga0114976_101080221	3300009184	Freshwater Lake	NRRGNRMSAYTIHQSAYYAAHLMSCGLVIESTRKNGGVVLRHDHVQFAEYVDALRTAIDYSEADALCRALLN*
Ga0114976_102469542	3300009184	Freshwater Lake	MLTIHQSAHYAAHLLNSSGLVIESTRKAGGVQLRRDHPQFAEYVDAFRTAIDAEEADALCRALLT
Ga0114964_100762963	3300010157	Freshwater Lake	MLTIHKSANYAAYLLNNSGLVIESTRKAGGVQLRPTHPQYAEYVDAIRTAIDTAEGDALCRALLN*
Ga0114960_103632641	3300010158	Freshwater Lake	MLITIHSSSHYVAHLMTSGLVIESTRKEGGVNLRHDHPQFAEYVDALRTAIDDQEGDALCRALLN*
Ga0136644_104584303	3300010334	Freshwater Lake	LLTTSPNKGYTMLTIHKSANYAAYLLNSSGLVIESTRKAGGVQLRPDHPQYADYVDAIRTAIDTAEGDALCRALLS*
Ga0133913_116986963	3300010885	Freshwater Lake	MLTIHQSAHYAAHLLNSSGLVIESTRKAGGVQLRRDHPQFAEYVDAFRTAIDAEEADALCRALLTA*
Ga0133913_120148835	3300010885	Freshwater Lake	LLNSSGLVIESTRKAGGVQLRPDHPQYADYVDAIRTAIDTAEGDALCRALLS*
Ga0139557_10344911	3300011010	Freshwater	TIHKSSHYAAHLSTSGLIVESTHKSGGKLLRFDHLQFNEYVDALRTAIDNDESDALCRALLKD*
Ga0153698_11065	3300011335	Freshwater	MLTLHKSAHYAAQLLNNSGLVIESTRKAGGVQLRPDHPQYGEYVDALRTAIDTAEADALCRALLN*
Ga0157208_100028264	3300012667	Freshwater	MLTIHSSSHYSAHLATCGLIVESTRKTGGVHLRHDHPQFHEYVDALRTAIDSDEADALCKALLN*
Ga0164296_11097492	3300013093	Freshwater	MITIHSSSNYSAHLLNSSGLIIESNRKTGGVQLRPNHPQYAEYVDAIRTAIDSKEADALCKALLN*
Ga0136642_11142041	3300013285	Freshwater	MLTIHKSVNYAAYLLNNSGLVIESTRKTGGVQLRPNHPQYADYVDAIRTAIDIAEGDALC
Ga0136641_10884332	3300013286	Freshwater	MSAFTIHQSQYYAAHLMSCALVIESKRKAGGVNLPHNHPQFAEYVDALRTAIDDSEGDALCRALLN*
Ga0119954_10074491	3300014819	Freshwater	MSAYTIHESQYYAAHLMLCGLVIESKRKQGGINLPHNHPQFAEYVDALRTAIDDSEGDALCRALLN*
Ga0181363_10146325	3300017707	Freshwater Lake	GDSMSAYTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFAEYVDALRTAIDDQEADSLCRALLN
Ga0181352_10592774	3300017747	Freshwater Lake	MSAYTIHQSKHYAAHLMSCGLVIESTRKQGGVVLRHDHVQFAEYVDALRTAVDDSEADALCRALLN
Ga0181356_10831092	3300017761	Freshwater Lake	MLTIHQSAYYSAHLLNSSGLIIESTRKTGGVQLRADHPQYAEYVDAFRTAIDADEADALCRALLN
Ga0181359_11277913	3300019784	Freshwater Lake	DAAHLSTSGLIVESTHKSGGKLLRFDHLQFNEYVDALRTAIDNDESDALCRALLKD
Ga0211735_103127042	3300020162	Freshwater	MSAFTIHKSAYYAAHLMSCGLVIESTRKAGGVNLRHDHPQFNEYVDALRTAIDDDEGDALCRALLN
Ga0181353_10276684	3300022179	Freshwater Lake	MSAYTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFTEYVDALRTAIDDQEADSLCRALFN
Ga0181353_10317192	3300022179	Freshwater Lake	MSAYTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFAEYVDALRTAIDDQEADSLCRALLN
Ga0181354_10355491	3300022190	Freshwater Lake	MLTIHKSSHYAAHLSTSGLIVESTHKSGGKLLRFDHLQFNEYVDALRTAIDNDESDALCRALLKD
Ga0222646_10131910	3300022822	Saline Water	MQTIHTSKYYNAYLLHHSGLIIESTRKTGGVQLLITHPQYDDYVDAIRTALDTEEADSLCKALMT
Ga0222646_1032318	3300022822	Saline Water	MQTIHTSKYYNAYLLHHSGLIIESTRKTGGIQLLITHPQYDDYVDAIRTALDTKEADSLCKALMT
Ga0222631_10143452	3300022843	Saline Water	MQTIHTSKYYNAYLLHHSGLIIESTRKTGGVQLLITHAQYDDYVDAIRTALDTEEADSLCKALMT
Ga0208738_100014810	3300025379	Freshwater	MLTLHTSSNYSAYLLNNSGLIIESNRKTGGVQLRPNHPQYAEYVDAIRTAIDSKEADALCKALLN
Ga0208738_10429321	3300025379	Freshwater	MLTIHKSTHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEA
Ga0208871_10137173	3300025381	Freshwater	MLTIHKSTHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALCKALLN
Ga0208387_10725193	3300025400	Freshwater	YAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALCKALLN
Ga0208876_10188091	3300025402	Freshwater	MLTIHKSTHYAAYLMNSSGLIVESTRKAGGVQLRPDHPQFAEYVDALRTAIDDKEADALC
Ga0208376_100077312	3300025455	Freshwater	MLTIHESAHYAAYLLNSSGLVIESKRKAGGVQLRPTHPQYAEYVDAIRTAIDTAEGDALCRALLN
Ga0208546_10286972	3300025585	Aqueous	MLTLHESANYCAYLMNSSGLIVQSTRKTGGVQMRADHPQFAEYVDAFRTAIDAREADALCKALLN
Ga0208147_10274746	3300025635	Aqueous	MSAYTIHQSAYYAAHLMSCGLVIESKRKSGGVNLRPDHPQFAEYVDALRTAIDDSEGDALCRALLN
Ga0208147_10311082	3300025635	Aqueous	MSAYTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFADYVDALRTAMDDSEADALCRALLN
Ga0208134_11613822	3300025652	Aqueous	MITIHKSSNYAAYLLNSSGLIIESTRKAGGVQMKPDHPQYGEYVDALRTAIDSQEADLLCRSLLN
Ga0208498_10361571	3300025785	Freshwater	MLTLHTSSNYSAYLLNNSGLIIESNRKTGGVQLRPNHPQYAEYVDAIRTAIDSKEADALCKALLNXFQLIGSHGAYWV
Ga0208644_13166711	3300025889	Aqueous	MTFTIHQSAYYAAHLMSCGLVIESTRKQGGVNLRHDHPQFNEYVDALRTAIDDKEADALCKALLN
Ga0208788_10293026	3300027499	Deep Subsurface	YYTASLMSCGLVIESTRKAGGVNLRHDHPQFAEYVDALRTAIDDDEGDAICRALLN
Ga0208975_10043355	3300027659	Freshwater Lentic	MITLHKSAHYAAHLLNNSGLVIESTRKSGGVQLRPDHPQYGEYVDAFRTAIDAAEADALCRALLN
Ga0209188_10964754	3300027708	Freshwater Lake	MITIHSSSNYSAHLLNSSGLVIESTRKKGGVQLRPEHPQYGEYVDAIRTAIDSNEADALCRALLN
(restricted) Ga0247836_11304864	3300027728	Freshwater	MSAYTIHQSAYYTANLMSCGLVIESTRKAGGVVLRHDHVQFGEYVDALRTAIDDSEADALCKALLN
Ga0209189_11133134	3300027747	Freshwater Lake	MLTIHQSANYAAHLIQSRLIIESTRKTGGVMLHIDHPQFAEYVDAFRTAIDTDEADALCRALLN
Ga0209084_10809082	3300027749	Freshwater Lake	MLTIHKSANYAAYLLNNSGLVIESTRKAGGVQLRPTHPQYAEYVDAIRTAIDTAEGDALCRALLN
Ga0209084_12109482	3300027749	Freshwater Lake	MMPAASTALLTTSPNKGYTMLTIHKSANYAAYLLNSSGLVIESTRKAGGVQLRPDHPQYADYVDAIRTAIDTAEGDALCRALLS
Ga0209296_11605573	3300027759	Freshwater Lake	MLTLHTSAHYAAHLIQAGLIVESTRKSGGVVLRIDHPQFAEYVDALRTAIDTHEADALCKALLN
Ga0209134_1000017817	3300027764	Freshwater Lake	MLTIHQSAHYAAHLLNSSGLIVESTHKRGGVQLRPDHPQYAEYVDALRTAIDSKEADALCKALLN
Ga0209134_100203744	3300027764	Freshwater Lake	MSAYTIHQSAYYAAHLMSCGLVIESTRKTGGVNLRRDHPQFAEYVDALRTAIDDKEADALCRALLN
Ga0209829_101889223	3300027777	Freshwater Lake	MITIHSSSNYSAHLLNSSGLIIESNRKKGGVQLRPEHPQYGEYVDAIRTAIDSNEADALCRALLN
Ga0247723_11068321	3300028025	Deep Subsurface Sediment	AAHLLNSSGLIVESTHKRGGVQLRPDHPQFAEYVDALRTAIDSKEADALCKALLN
(restricted) Ga0247843_11865043	3300028569	Freshwater	MSAYTIHQSAYYTANLMSCGLVIESTRKAGGVVLRHDHVQFGEYVDAFRTAIDDSEADALCKALLN
Ga0315899_114142802	3300031784	Freshwater	MLITIHSSANYTAHLMTSGLIIESTRKAGGVQLRHNHPQFNEYVDALRTAIDDKEGDALCRALLN
Ga0315904_109569012	3300031951	Freshwater	MSAFTIHKSEYYAAHLMSCGLVIESTRKAGGVNLRHDHPQFNEYVDALRTAIDDDEGDALCRALLN
Ga0315904_114073391	3300031951	Freshwater	MITIHSSTYYTAHLMTSGLIIESTRKVGGVQLRHNHPQFNEYVDALRTAIDEKEADALCRALLN
Ga0315274_101982281	3300031999	Sediment	MSAYTIHQSAYYAAHLMSCGLIIESKRKSGGVNLPHNHPQFAEYVDALRTAIDDKEADALCRALLN
Ga0315284_115501282	3300032053	Sediment	MITIHQSAHYAAHVHPSAGLIVESTRKPGGVRLPPEHPQFAEYVDALRTAIDDKEADALCRALLN
Ga0316226_12896483	3300032562	Freshwater	MITIHTSSNYSAYLMNNSGLIVEHNRKKGGIQLKPNHPQYCEYVDALRTAIDSKEADALCKALVQA
Ga0316221_10301765	3300032665	Freshwater	MLTIHSSSNYSAHLLNSSGLIIESNRKTGGVQLRPDHPQYAEYVDALRTAIDSKEADALCKALLN
Ga0335002_0422365_183_380	3300034020	Freshwater	MLTLHQSANYAVHLLNNSGLIVESTRKTGGVQLRSDHPQFAEYVDAFRTAIDSSEADALCKALFN
Ga0335036_0366029_64_261	3300034106	Freshwater	MITLHQSANYSAHLLNSSGLIIESTRKSGGVQMRADHPQFAEYVDAFRTAIDSSEADALCKALLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters