Scaffold Ga0153698_1071

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1071
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 41403
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (85.92%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F005558	Metagenome	396	Y
F008490	Metagenome / Metatranscriptome	332	Y
F016784	Metagenome / Metatranscriptome	244	Y
F023834	Metagenome	208	Y
F026830	Metagenome / Metatranscriptome	196	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_10712	F023834	N/A	MGDSSLMNKEYWQAKADLCRDLALIQIQDEETEKEAGMNLMRMTYALSMIDTYSEGKGE*
Ga0153698_107125	F008490	AGGAG	MKNSENGMMDDMGMEEDLMPYPAPDKQYPGAAKYSSYESIQTGAMGKAAK*
Ga0153698_107143	F001094	AGGAG	MNAKTKAVLASYLRAAVAAVIALYLAGETDPKKLSTAAVAAVAGPVLKWLDPKATEFGRGSK*
Ga0153698_107145	F016784	AGGA	MEFNTYDYVAPEFKDVIATGEYAAHYWFEQGWRACRLAFLLHKQAEEAGAFRV*
Ga0153698_107155	F026830	AGGAG	MPVPEGNITTSDILVPEVVPVEEVEEVEDDLPELS*
Ga0153698_107163	F095162	GGCGG	MSDEKRLASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKELLEKEKVSDEQEGKTWIDLNGSTASPRTIARAKARGITLTQTDTDQGNNGGEA*
Ga0153698_107165	F093528	AGGGGG	VSEETTTHVITVVIQAGKKRNKVELFDFSGDEPTLLAAGEATNWRTALGEALSKISLSSELPEKTINDEVKNIVEGQGENE*
Ga0153698_107166	F005558	AGAAGG	MSVDLSWSELAELTHATQVEHFSFCLCEDNEGNENPYDDCPKGEGK*
Ga0153698_107167	F023834	GGA	MNKEYWKAKADLCRDLALIQIQDEETEKEAGMNLMRMTYALSMIDTYSEGKGE*