Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1041 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1041 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	55456
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (75.90%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

55456

Total Scaffold Genes

83 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (75.90%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019103	Metagenome	231	Y
F042219	Metagenome	158	N
F042221	Metagenome	158	Y
F056421	Metagenome	137	Y
F057202	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_104113	F057202	N/A	MESSMTLTQQIKRMTRRLTPVEMAAAELAEAELHRLEAHSAVEYASSVVSYEDARIKRLRKFLADAEKQT*
Ga0153698_104115	F056421	GAGG	MKDDEIEDLFKYGWIDTAVAIVLALLALVALFFMVGYLT*
Ga0153698_104119	F042221	AGGAG	MVTEDEEFERFKHEQKFRLDSTFTAAVAQDYFWMPIDDQTPQGVKVLLLGRSGVATMGHYIYKVGETQFWQYWAPLPRKRL*
Ga0153698_104152	F042219	GGTGG	MEGEQMAKGKTVVVEATRYPLDEFAVKAESLVARLERVKNDHEARWGIRRIEMLVDSSLRLKLEQQMERVFNAQKERDIEKMEKAVNGMVKGFGVLDQWALDNNIEQPSINAVEWVMQDKSVMVVVQTHADAIYYQQFRPDVGNRHIWSMEELELLLQSDIIQDIIKAKALLPGTRMVQVTPGGKTGFDDWPNADVDLSGGIKEPLFNFEHARMMGGVRSR*
Ga0153698_104161	F019103	N/A	MKTPIWTTGYKPTKEDLKGLYNHRFETAGGLVLDCYLAYEEAERETRDEPGSAESIELIWALVEGVDISEVIGDLAATIEEEALEDMAVQAEHDQYDRGQERYEDRSAI*
Ga0153698_104165	F056421	GGAG	MKDDEVENLFKYGWLDTSIAIAIALLAMVALFFFAGYLT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1041

Overview

Ecosystem & Geography

Associated Families

Sequences