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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011335 Open in IMG/M |
| Scaffold ID | Ga0153698_1036 Open in IMG/M |
| Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 56649 |
| Total Scaffold Genes | 85 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 60 (70.59%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024264 | Metagenome / Metatranscriptome | 206 | Y |
| F050977 | Metagenome | 144 | N |
| F072098 | Metagenome / Metatranscriptome | 121 | Y |
| F073253 | Metagenome / Metatranscriptome | 120 | N |
| F095136 | Metagenome / Metatranscriptome | 105 | N |
| F102822 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153698_103627 | F095136 | AGG | MYFINGLRETAERRVNGMTNEVNKQLLDALEAMCEIYIPEDESLENDAVAGYAMNILETAKKIEVAYKNKPLPEDDVWDLVKDINPHDPMYPIHFARAIERKHGIGA* |
| Ga0153698_103632 | F102822 | AGGA | MIQEPMNDVYLREYYTSYTLKNNISVEFEKFKNLVRLIESHHGIDDDNEAQDALENIEHEIIARACRNGVCED* |
| Ga0153698_103646 | F073253 | AGG | MSFMVVDAVTDEIVESNFEYKHHAELFIEVHGKDYPNAELIVESA* |
| Ga0153698_103649 | F072098 | N/A | MSQHRYVGLIDGEKIRGFHSRAELEHWLKDKPEATFVRYSVKREKKEKIDLSIYELAPF* |
| Ga0153698_103663 | F024264 | AGGA | MSTLTNVFSKHEDATGVIYNGATNLAGYQLLSGGVAGEIVFRDGGSGGTEMLRVNVSSNLVPVSTLIPGNGIRFNTNIHVTLPASASVTIFCG* |
| Ga0153698_103683 | F050977 | N/A | LTGTIEEVKKMSSVETRIIVLEDRSRTTERQLVDVMMSNNRALEKANEAYGRAIEANSVAKSSQDKITDTVANVKDEMKQLRKAMINPLGN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |