Scaffold Ga0153698_1024

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1024
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 60463
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (83.75%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002286	Metagenome	574	Y
F002653	Metagenome	539	Y
F004759	Metagenome / Metatranscriptome	424	Y
F005233	Metagenome	407	Y
F006622	Metagenome	368	Y
F023041	Metagenome	211	Y
F042903	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_10241	F006622	AGG	VNEYQKQFDMFLKVFVRLCVAWWVLGLLQYLPDELAGKIVDKLLGMIGL*
Ga0153698_102413	F004759	AGGAG	MDKKDLAQDKKMIKSAVGKHEKNMHPGKKPTKLKAGGKTNGDMLKYGRNMAKVMNQRSVGRGG*
Ga0153698_102432	F005233	N/A	MLEHLIHGEFHPDVVDMTAATLLPFDKADPTTTIDAKVKTADWLKDLGLDDEEIETKADAQAARKSFASLVTGQSVATTQQALTSVKAPAAVQHLVGMLTAYDWAFVEQAKELRGFAVAKILEEVEHPDARIRLKALDMLGKVTEVALFTERVEVKKTEMTDVELETRIKDKLNRFMGVIDVVDVSEEKSDED*
Ga0153698_102446	F023041	AGGAG	MKHTPYDTGKVKIGLLYTPPPSIPTPEETWVQGLLLGDRQGMDELTLTTIQSIGLIAFIAIVMLLTGGTSNA*
Ga0153698_102455	F002653	GGAG	MLEADFSMTEAELERRVHAMSDEEQAHFKLLIHKLVMCYGEGKAQGVVIIGRAEDQLAGVVTLNCNEMEASQLMLAANDFFGFLNLLDAPPKENFN*
Ga0153698_102456	F042903	AGGAG	MAKLPYTYTICSDQEAPKNFTASCKDMGELLRHSPNGDLTINQKRTAAWDMWSGNHMGHIEEALHEMAKKEKPNDK*
Ga0153698_102470	F002286	N/A	MAYSQKIIDDVAKTPKSLGNQLGRWAIHLDFPVTKIAFALGVSRQTVYNWFTGTEVFVAYRNRVEFLTKIMQTSRTADEAWRKICTEYNLDP*
Ga0153698_102480	F006622	N/A	AVNEYQKQFDMFLKVFVRLCVAWWVLGLLQYLTDELAGKIVDKLLGMIGL*