Scaffold Ga0153698_1004

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1004
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 113802
• Total Scaffold Genes: 192
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (63.02%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F014733	Metagenome / Metatranscriptome	260	Y
F035734	Metagenome	171	Y
F076069	Metagenome / Metatranscriptome	118	Y
F096612	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_1004112	F076069	GAGG	MTVFKSFYNFLGNYGRCCVAVHLTALGDHAGAQRIMMEDFQGWI*
Ga0153698_1004116	F002869	GGAG	MTTEITTEMLDRTIAWCEQNAFWGKPSAVPRMLDFYFEKTRTSVKEDWPETFTFQDLAKALGEYPVRYRIYYSQDNLTLRLFVFRPRCTWSEEKKMLDLGFVVAQDGDTENIPDQPVKQVVEE*
Ga0153698_1004135	F035734	N/A	MISPFRTWLAELWRNNCEELDGYGQPRYTLQEYFARHKWWLKREYQYQRGARRLS*
Ga0153698_100428	F014733	AGGA	MYEIWDGELFLYAVDTKYEADEAVEAGFQIQIRTN*
Ga0153698_100483	F096612	GGA	MNALIERMISEAGLKYSPEQAEAVERLVRITATFCIDQCGGKGVCVGSTLVKNKILTAFEMNRPPERTL*