Scaffold Ga0153697_1392

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1392
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13876
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F007691	Metagenome / Metatranscriptome	346	Y
F083901	Metagenome / Metatranscriptome	112	Y
F095135	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_139214	F083901	GGAGG	MNQTTKSKSVLTYRTYRKARDRALIRLSHLYPDTYKQLLAIERKFDEKEGKDWTGIDGFANLRVGTHTRANGTPPFGDPADAGEDEGNNGGEA*
Ga0153697_139226	F007691	AGGAG	MDTLEQLINEIHEDNYSHLEFDENMGGEGCKCEIHTTLNTIVRYRDKEGN*
Ga0153697_139235	F095135	AGGAG	MAQMKKPVVKATTKPKAPVKKKVLVMPSKISPSKMTPAQKARYLKNPERYDG*
Ga0153697_13924	F003456	GAG	MKWLRKAGVMAERLSKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAQVEALNYSKARGLGEVPLSYVIVKRRNASIDQAWVISDLAQWLKEKQ*